View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12757_low_18 (Length: 247)
Name: NF12757_low_18
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2448895 - 2448658
Alignment:
| Q |
1 |
cttacatctatctccagattgttagcatgttatttcttttaaatattgatttaaggatttcaatctttgtttactcatgaattttacgatataggcgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448895 |
cttacatctatctccagattgttagcatgttatttcttttaaatattgatttaaggatttcaatctttgtttactcatgaattttacgatataggcgatg |
2448796 |
T |
|
| Q |
101 |
attgcaatgctattaaaggtgggtcacaattcatcaatgtccctcaagttacatgcggacctgggactcatggcattaggtatgtcacaatactctaaca |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2448795 |
attgcattgctattaaaggtgggtcacaattcatcaatgtcactcaagttacatgtggacctgggactcatggcattaggtatgtcaaaatactctaaca |
2448696 |
T |
|
| Q |
201 |
tgtaaacatcaagcttctatgcacaatttatctctctg |
238 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2448695 |
tgtaaacatcaagcttctatgcataatttatctctctg |
2448658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University