View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_low_19 (Length: 246)
Name: NF12757_low_19
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 53044068 - 53044298
Alignment:
| Q |
1 |
ctaatgcagcaatgtctgaatattgtcgtggcaaggtagcaggggagttttaaataaactttaatgtaactagcctgaataggnnnnnnnnnnngttgtt |
100 |
Q |
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|||||||||||||| ||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53044068 |
ctaatgcagcaatgcctgaagatggccgtggcaaggtagcaggtgagttttaaataaactttaatgtaactagcctgaataggtttttttttt--ttgtt |
53044165 |
T |
|
| Q |
101 |
gaggggtattctgaataggtttcttcagcatcattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaaggatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044166 |
gaggggtattctgaataggtttcttcagcatcattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaaggatt |
53044265 |
T |
|
| Q |
201 |
ggatgtcaagggcctcgtgaaagctgatccagt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53044266 |
ggatgtcaagggcctcgtgaaagctgatccagt |
53044298 |
T |
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