View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_low_22 (Length: 239)
Name: NF12757_low_22
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 7175877 - 7175686
Alignment:
| Q |
18 |
tcatataatggatgagttgtttcaaaggtatgctaaacatgtggaggatcatttgtccaaaactagaacaaaatgcatcaatttggtcatttctcttgtc |
117 |
Q |
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| T |
7175877 |
tcatataatggatgagttgtttcaaaggtatgctaaacatgtggaggatcatttgtccaaaactagaaccaaatgcatcaatttggtcatttctcttgtc |
7175778 |
T |
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| Q |
118 |
aagcgacaatgaaacacaaacactcatgtgtaatttgttttataaaggttgggagaatccaacttcaataatgtttgataatatctagcactc |
210 |
Q |
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| T |
7175777 |
aagcgacaatgaaacacaaacaatcatgtgt-atttgttttataaaagttgggagaatccaacttcaataatgtttgataatatctagcactc |
7175686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 7187553 - 7187384
Alignment:
| Q |
18 |
tcatataatggatgagttgtttcaaaggtatgctaaacatgtggaggatcatttgtccaaaactagaacaaaatgcatcaatttggtcatttctcttgtc |
117 |
Q |
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| T |
7187553 |
tcatataatggatgaattgtttcaaaggtttgccaaatttgtggaggatcatttgtcaaaaacaaggaccaaatacatcaatttgatcatttctcttgtc |
7187454 |
T |
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| Q |
118 |
aagcgacaatgaaacacaaacactcatgtgtaatttgttttataaaggttgggagaatccaacttcaataatgtt |
192 |
Q |
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| T |
7187453 |
aagcgacaatgaaacacaaacact-atatg---tttgttttttaaa-atttgcagaatccaacttcaataatgtt |
7187384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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