View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_low_26 (Length: 216)
Name: NF12757_low_26
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 2922066 - 2921861
Alignment:
| Q |
1 |
gaaatgtataaaagatcgtagctagcttaaagttacagccggtgaattcaggcctccttcaaagtcattcttaattcgctaaccattggggaaaattttg |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2922066 |
gaaatgtataaaagatcgtagctggcttaaagttacagccggtgaattcaggcctccttcaaagtcattcttaattcgctaaccattggggaaaattttg |
2921967 |
T |
|
| Q |
101 |
caaagtggttcagttcttgtcgatattcccctgattgatgagagcttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2921966 |
caaagtggttcagttcttgtcgatattcccctgattgatgagagcttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtga |
2921867 |
T |
|
| Q |
201 |
tgtcca |
206 |
Q |
| |
|
|||||| |
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|
| T |
2921866 |
tgtcca |
2921861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 37796913 - 37796710
Alignment:
| Q |
3 |
aatgtataaaagatcgtagctagcttaaagttacagccggtgaattcaggcctccttcaaagtcattcttaattcgctaaccattggggaaaattttgca |
102 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||| | || || ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
37796913 |
aatgtataaaagatggcagctggcttaaagttatcgttaatggatacagtcctccttcaaagtcgttcttaattcgctcgccattggggaaaattttgca |
37796814 |
T |
|
| Q |
103 |
aagtggttcagttcttgtcgatattcccctgattgatgagagcttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtgatg |
202 |
Q |
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||||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37796813 |
aagtggttcggtgcttgttgatatccccctcattgatgagagcttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtgatg |
37796714 |
T |
|
| Q |
203 |
tcca |
206 |
Q |
| |
|
|||| |
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|
| T |
37796713 |
tcca |
37796710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 3011404 - 3011555
Alignment:
| Q |
52 |
gcctccttcaaagtcattcttaattcgctaaccattggggaaaattttgcaaagtggttcagttcttgtcgatattcccctgattgatgagagcttctac |
151 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||||| ||| ||||||||||||||| ||| ||||| || |||||||||||||||||||||||||| |
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| T |
3011404 |
gcctccttcaaagtcattcttaattggcttatcattgggaaaacttttgcaaagtggtttagtacttgttgacattcccctgattgatgagagcttctat |
3011503 |
T |
|
| Q |
152 |
ggggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgt |
203 |
Q |
| |
|
||||||| ||||||| | || |||||||||||||||||||||||||||||| |
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|
| T |
3011504 |
ggggatagaataaatgaatacaaagaggagttgaaaacaattggagtgatgt |
3011555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 2931358 - 2931212
Alignment:
| Q |
54 |
ctccttcaaagtcattcttaattcgctaaccattggggaaaattttgcaaagtggttcagttcttgtcgatattcccctgattgatgagagcttctacgg |
153 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||| || |||||||||||||||||||||||||| ||||||||| | || ||||| |||||||| || |
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|
| T |
2931358 |
ctccttcaaagtcattcttaattggtt---cattgggaaatattttgcaaagtggttcagttcttgtggatattcccttaatagatgaaagcttctatgg |
2931262 |
T |
|
| Q |
154 |
ggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgt |
203 |
Q |
| |
|
|| | ||||||| |||| ||||||| ||||||||||||||||| |||| |
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|
| T |
2931261 |
agagagaataaatgagtacaaagaggaattgaaaacaattggagttatgt |
2931212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 2948016 - 2947868
Alignment:
| Q |
52 |
gcctccttcaaagtcattcttaattcgctaaccattggggaaaattttgcaaagtggttcagttcttgtcgatattcccctgattgatgagagcttctac |
151 |
Q |
| |
|
|||||||||||| ||||||||||||| | | ||||| | | |||||||||||||||||| |||||| || || ||||||||||||||||||||||| |
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|
| T |
2948016 |
gcctccttcaaattcattcttaattcattcatcattgagaatttttttgcaaagtggttcagatcttgttgacatccccctgattgatgagagcttctat |
2947917 |
T |
|
| Q |
152 |
ggggataaaataaataagtatgaagaggagttgaaaacaattggagtga |
200 |
Q |
| |
|
||||| | ||||||| ||| |||| ||||| |||| | ||||||||| |
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|
| T |
2947916 |
ggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagtga |
2947868 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 28025913 - 28025708
Alignment:
| Q |
1 |
gaaatgtataaaagatcgtagctagcttaaagttacagccggtgaattcaggcctccttcaaagtcattcttaattcgctaaccattggggaaaattttg |
100 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||| | | || || |||||||||||||||||| ||||||||||||| |||||||| ||| ||||| |
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|
| T |
28025913 |
gaaatgtataaaagatggcagctggcttaaagttaccgtcattggatacaggcctccttcaaagtcgttcttaattcgctcgccattgggaaaatttttg |
28025814 |
T |
|
| Q |
101 |
caaagtggttcagttcttgtcgatattcccctgattgatgagagcttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtga |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||| |||||| ||||||||||| ||||||||||| | ||||||| |
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|
| T |
28025813 |
caaagtggttcagttcttgttgatatccccctgattgacgagagcttctatggggatagaataaacaagtatgaagaagagttgaaaactgtaggagtga |
28025714 |
T |
|
| Q |
201 |
tgtcca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
28025713 |
tgtcca |
28025708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 4915468 - 4915618
Alignment:
| Q |
53 |
cctccttcaaagtcattcttaattcgctaaccattggggaaaattttgcaaagtggttcagttcttgtcgatattcccctgattgatgagagcttctacg |
152 |
Q |
| |
|
|||||||| ||||||||||||||| | | | |||| ||| || |||||||||||||||||||||| || |||||||||||||||||||||||||| | |
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|
| T |
4915468 |
cctccttcgaagtcattcttaattggttcatggttggaaaaacttctgcaaagtggttcagttcttgttgacattcccctgattgatgagagcttctatg |
4915567 |
T |
|
| Q |
153 |
gggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgt |
203 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4915568 |
gggatagaataaataagtacaaagaggagttgaaaacagttggagtgatgt |
4915618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 1505719 - 1505855
Alignment:
| Q |
52 |
gcctccttcaaagtcattcttaattcgctaaccattggggaaaattttgcaaagtggttcagttcttgtcgatattcccctgattgatgagagcttctac |
151 |
Q |
| |
|
|||||| |||||||||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||| |
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|
| T |
1505719 |
gcctccctcaaagtcattcttaattggctcatcattgcggaaaattttgcaaagtggttcatttcttgttgacattcccctgattgacgagagcttctac |
1505818 |
T |
|
| Q |
152 |
ggggataaaataaataagtatgaagaggagttgaaaa |
188 |
Q |
| |
|
||| ||| ||||||| |||| ||| |||||||||| |
|
|
| T |
1505819 |
gggaatagaataaatgagtacacagaagagttgaaaa |
1505855 |
T |
|
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