View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12757_low_3 (Length: 692)

Name: NF12757_low_3
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12757_low_3
NF12757_low_3
[»] chr3 (3 HSPs)
chr3 (9-675)||(41036511-41037177)
chr3 (366-419)||(47542542-47542595)
chr3 (367-419)||(21161498-21161550)
[»] chr6 (3 HSPs)
chr6 (367-416)||(10760844-10760892)
chr6 (367-399)||(17422274-17422306)
chr6 (352-412)||(24102049-24102109)
[»] chr1 (5 HSPs)
chr1 (350-411)||(43328458-43328519)
chr1 (260-299)||(9871490-9871529)
chr1 (357-399)||(47892675-47892717)
chr1 (124-168)||(9871340-9871384)
chr1 (367-419)||(43609817-43609869)
[»] scaffold0373 (1 HSPs)
scaffold0373 (354-416)||(1220-1280)
[»] chr8 (7 HSPs)
chr8 (367-418)||(43300520-43300571)
chr8 (350-412)||(6501486-6501548)
chr8 (350-403)||(11815820-11815873)
chr8 (367-412)||(31586283-31586328)
chr8 (366-410)||(2517114-2517158)
chr8 (366-418)||(34259795-34259847)
chr8 (368-412)||(43534933-43534977)
[»] chr5 (4 HSPs)
chr5 (359-410)||(39828466-39828517)
chr5 (367-405)||(16315881-16315919)
chr5 (350-411)||(38588299-38588360)
chr5 (367-419)||(5616211-5616263)
[»] chr4 (5 HSPs)
chr4 (354-416)||(6844647-6844707)
chr4 (366-400)||(25795782-25795816)
chr4 (359-416)||(30127676-30127733)
chr4 (368-416)||(3587929-3587977)
chr4 (366-418)||(19262924-19262976)
[»] chr2 (1 HSPs)
chr2 (350-417)||(33498619-33498686)


Alignment Details
Target: chr3 (Bit Score: 631; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 9 - 675
Target Start/End: Complemental strand, 41037177 - 41036511
Alignment:
Q  9 gaggagcagagatatagagaagagatcagagataaactctgccattgaagagctttcagtgcttgttatagtcaaacctgaagaagatcatgagtctggt 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41037177 gaggagtagagatatagagaagagatcagagataaactctgccattgaagagctttcagtgcttgttatagtcaaacctgaagaagatcatgaggctggt 41037078  T
Q  109 gcacgcatcccaacaaagcctttcctatctttatgttacatggttctacaagttcttggttagtaccaacatttttcatttatttttaatcatgatagtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41037077 gcacgcatcccaacaaagcctttcctatctttatgttacatggttctacaagttcttggttagtaccaacatttttcatttatttttaatcatgatagtt 41036978  T
Q  209 atgtaacaccaaacaaattttaagtatgttttttattgattgattgtcttgcagataaggtagggccaacaatggctgttttgagacaagacattcacca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41036977 atgtaacaccaaacaaattttaagtatgttttttattgattgattatcttgcagataaggtagggccaacaatggctgttttgagacaagacattcacca 41036878  T
Q  309 gaatattaaggtaaccaaatactcgcacacacatgacatggtgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41036877 gaatattaaggtaaccaaatactcgcacacacatgacatggtgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgt 41036778  T
Q  409 gtcgatgttgtctcaccggcggacacgagacaagtttttaatttgaagttacttttttcagttaacatatagttagttacacattggtcaaacaaattaa 508  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41036777 gtcgatgttgtctcagtggcggacacgagacaagtttttagtttgaaattacttttttcagttaacatatagttagttacacattggtcaaacaaattaa 41036678  T
Q  509 catgcagctatgatcaatgtgctattgagttatgctatgtgtcattgcattgcagaggttggaagcaatacatgaatcgaatcccttaaccaattcaaat 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41036677 catgcagctatgatcaatgtgctattgagttatgctatgtgtcattgcattgcagaggttggaagcaatacatgaatcaaatcccttaaccaattcaaat 41036578  T
Q  609 ttagttgagatattcaagtcagaaactagcaaaggaaatgcaaagaagagagttagcggcagtaaat 675  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41036577 ttagttgagatattcaagtcagaaactagcaaaggaaatggaaagaagagagttagcggcagtaaat 41036511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 47542542 - 47542595
Alignment:
Q  366 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 419  Q
    ||||||||||||||||||||  || |||||||||| |||| |||||| ||||||    
T  47542542 gtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgttgt 47542595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 21161550 - 21161498
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 419  Q
    ||||||||||| ||||| ||||||||||||||||  | | |||||||||||||    
T  21161550 taataatttgaaaaaataatatagttgaatgtaattatatgtgtcgatgttgt 21161498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 10760892 - 10760844
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 416  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  10760892 taataatttgagaaaatgacata-ttgaatgtaatcacacgtgtcgatgt 10760844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 17422306 - 17422274
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgta 399  Q
    ||||||||||||||||||||||| |||||||||    
T  17422306 taataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 24102109 - 24102049
Alignment:
Q  352 acaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 412  Q
    |||| |||||||  ||||||||||||| || |||  || ||||||||||||||||||||||    
T  24102109 acactttgacactggtaataatttgagtaagtgaactatttgaatgtaaccacacgtgtcg 24102049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 43328458 - 43328519
Alignment:
Q  350 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtc 411  Q
    |||||| ||||||| | ||||||||||||||||||| ||| || |||||||||||| |||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtc 43328519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 9871490 - 9871529
Alignment:
Q  260 cagataaggtagggccaacaatggctgttttgagacaaga 299  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  9871490 cagataaaatagggccaacaatggctgttttgagacaaga 9871529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 47892675 - 47892717
Alignment:
Q  357 ttgacacatgtaataatttgagaaaatgatatagttgaatgta 399  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||    
T  47892675 ttgacacatgtaataatttgagaaagtgaaatatttgaatgta 47892717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 9871340 - 9871384
Alignment:
Q  124 aagcctttcctatctttatgttacatggttctacaagttcttggt 168  Q
    ||||||||||| ||| |||||||  ||||||||||||||||||||    
T  9871340 aagcctttcctctctatatgttatttggttctacaagttcttggt 9871384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 43609869 - 43609817
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 419  Q
    ||||||||||||||||| | ||| |||||||||| |||| ||||| |||||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgtccatgttgt 43609817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 1280 - 1220
Alignment:
Q  354 accttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 416  Q
    |||||||||| ||||||||||||||||||||  | | |||||||||| |||| ||||||||||    
T  1280 accttgacacgtgtaataatttgagaaaatg--acaattgaatgtaatcacatgtgtcgatgt 1220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 43300520 - 43300571
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 418  Q
    ||||||||||||||| | | ||| |||||||||| |||||||||||||||||    
T  43300520 taataatttgagaaagttaaatatttgaatgtaatcacacgtgtcgatgttg 43300571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 6501486 - 6501548
Alignment:
Q  350 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 412  Q
    |||||| |||||||  |||||||||||||| ||||| ||| || |||||||||||| ||||||    
T  6501486 tgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcg 6501548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 11815820 - 11815873
Alignment:
Q  350 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaacca 403  Q
    |||||| |||||||   |||||||||||||||||| |||| |||||||||||||    
T  11815820 tgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacca 11815873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 31586328 - 31586283
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 412  Q
    ||||||||||||||||||||||| |  ||||||| |||||||||||    
T  31586328 taataatttgagaaaatgatataatataatgtaatcacacgtgtcg 31586283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 2517114 - 2517158
Alignment:
Q  366 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 410  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||    
T  2517114 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 2517158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 34259847 - 34259795
Alignment:
Q  366 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 418  Q
    |||||||||||||||||||| ||| |||||| |||| | |||||||| |||||    
T  34259847 gtaataatttgagaaaatgaaataattgaatataactagacgtgtcggtgttg 34259795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 43534933 - 43534977
Alignment:
Q  368 aataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 412  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||||||    
T  43534933 aataatttgagaaaatgaaatatttgaatgtaactacatgtgtcg 43534977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 39828466 - 39828517
Alignment:
Q  359 gacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 410  Q
    ||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  39828466 gacacttgtaataatttgagaatatgaaataattgaatgtaaccacatgtgt 39828517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 405
Target Start/End: Original strand, 16315881 - 16315919
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgtaaccaca 405  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  16315881 taataatttgaggaaatgatataattgaatgtaaccaca 16315919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 38588360 - 38588299
Alignment:
Q  350 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtc 411  Q
    |||||| |||||||| |||||||||||||||| ||| ||| | |||| |||||||| |||||    
T  38588360 tgacacgttgacacaagtaataatttgagaaagtgaaatattagaatctaaccacatgtgtc 38588299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 5616263 - 5616211
Alignment:
Q  367 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 419  Q
    ||||||||||| ||||| ||||||||||||||||  | | |||||||||||||    
T  5616263 taataatttgaaaaaataatatagttgaatgtaattatatgtgtcgatgttgt 5616211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 6844707 - 6844647
Alignment:
Q  354 accttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 416  Q
    |||||||||| ||||||||||||||||||||  | | |||||||||| |||| ||||||||||    
T  6844707 accttgacacgtgtaataatttgagaaaatg--acaattgaatgtaatcacatgtgtcgatgt 6844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 400
Target Start/End: Complemental strand, 25795816 - 25795782
Alignment:
Q  366 gtaataatttgagaaaatgatatagttgaatgtaa 400  Q
    ||||||||||||||||||||||||||| |||||||    
T  25795816 gtaataatttgagaaaatgatatagttaaatgtaa 25795782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 30127733 - 30127676
Alignment:
Q  359 gacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 416  Q
    ||||||||| ||| ||||||||||||| ||  ||||||||||||||| ||||| ||||    
T  30127733 gacacatgtgatagtttgagaaaatgaaattattgaatgtaaccacatgtgtcaatgt 30127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 3587929 - 3587977
Alignment:
Q  368 aataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 416  Q
    |||||||||||||| ||| ||| ||||||||||||||| ||||| ||||    
T  3587929 aataatttgagaaagtgaaatatttgaatgtaaccacatgtgtccatgt 3587977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 19262976 - 19262924
Alignment:
Q  366 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 418  Q
    ||||||||||||||| |||| ||| |||||||||| |||| ||||| ||||||    
T  19262976 gtaataatttgagaagatgacataattgaatgtaatcacatgtgtcaatgttg 19262924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 33498619 - 33498686
Alignment:
Q  350 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgtt 417  Q
    |||||| | |||||| |||||||||||||||||||  ||| ||||||||||||  |||||||| ||||    
T  33498619 tgacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaacctgacgtgtcggtgtt 33498686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University