View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12757_low_4 (Length: 658)
Name: NF12757_low_4
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 203 - 644
Target Start/End: Original strand, 44000695 - 44001136
Alignment:
| Q |
203 |
gtttttataacaacattcaccgttctgtttctctcgtactgttgctccatgccgctgcgtttctctacctccgctggaaccctatcatcaccttctctac |
302 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
44000695 |
gtttttataacaacattcatcgttctgtttctctcgtactgttgctccatgccactgcgtttctctacctccgctggaatcctatcatcaccttcgctac |
44000794 |
T |
|
| Q |
303 |
ccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctctaat |
402 |
Q |
| |
|
||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44000795 |
ccattcttccgtctgaactcgag-aagaaattttgtgtaggttaccggtgaagatactcctgcaactccgatgcatctgcaagtcctggaaatctctaat |
44000893 |
T |
|
| Q |
403 |
ttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaagaagcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttgggat |
502 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
44000894 |
ttcaaatgatagtacattcgcaaagaagcagctttgcatgtcaaagaagcgtctcattgtaagcagtgtaaacgatccagatgaactacttctttgggat |
44000993 |
T |
|
| Q |
503 |
tcctcaatttcatctgttttcagcaatgtatcaaactctactgtcacacagactcaactcaattgcccaatttccttcaatagtctttttaggttattat |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000994 |
tcctcaatttcatctgttttcagcaatgtatcaaactctactgtcacacagactcaactcaattgcccaatttccttcaatagtctttttaggttattat |
44001093 |
T |
|
| Q |
603 |
aaggcaataatttgg-aatttgctcttgccacggtattctctg |
644 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44001094 |
acggcaataatttggaaatttgctcttgccacggtattctctg |
44001136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 300 - 579
Target Start/End: Original strand, 43991233 - 43991518
Alignment:
| Q |
300 |
tacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctct |
399 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
43991233 |
tacccactcttccgtttgaacttgtggaagaaatcctgtgtagattaccggtgaagatactcatgcaactccaatgcatctgcaagtcctggaaatctct |
43991332 |
T |
|
| Q |
400 |
aatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaaga----agcgtctcattgtaagcagtgtaaacgacccaaatgaactacttct |
495 |
Q |
| |
|
|| || |||||| ||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || ||||| |||| | |
|
|
| T |
43991333 |
tatctcgaatgatcgtaaatttgcaaagaagcaccttcgcatgtcaaagagggtagc-actcattgtaagcagtgtaaacgactcaggtgaaccactttt |
43991431 |
T |
|
| Q |
496 |
ttgggattcctcaatttcatctgttttcagcaatgtatcaaactct---actgtcacacagactcaactcaattgcccaatttcctt |
579 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| |||||| | ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
43991432 |
ttgggattcctcaatttcctctgttttcagcaatgcatccaactctagcagcgtcacacagactcaactcatttgcccattttcctt |
43991518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 299 - 584
Target Start/End: Original strand, 43996812 - 43997100
Alignment:
| Q |
299 |
ctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctc |
398 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
43996812 |
ctacctactcttcggtctgaacttgtggaagaaatattgtgcaggttaccggtgaagatacttctgcagctccgatgcatatgcaagtcctggaaaactc |
43996911 |
T |
|
| Q |
399 |
taatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaagaagcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttg |
498 |
Q |
| |
|
|||| | || ||| | ||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||| | ||||||| |
|
|
| T |
43996912 |
taatcaccaacgatccttaattttcaaagaagcaccttcgcatgtcaaagaagcatctcattgtaagcagtttaaacgactcaggtgaatcatttctttg |
43997011 |
T |
|
| Q |
499 |
ggattcctcaatttcatctgttttcagcaatgtatcaaactct---actgtcacacagactcaactcaattgcccaatttccttcaata |
584 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||| |||||| | ||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
43997012 |
ggattcatcaatttcctctgttttcagcaatgcatccaactctagcagcgtcacacagacacaactcaagtgcccaatttccttgaata |
43997100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 44000575 - 44000697
Alignment:
| Q |
22 |
ccccgatagatattttttgggattaaaatttgattgggttgcaacttatgctaaatattttttctttgaaaatatgtatgagcaatttaagggattatta |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44000575 |
ccccgatagatattttttgggattaaaatttgattgggttgaaacttatgctaaatattttttctttgaaaatatgtatgagcaatttaagggattatca |
44000674 |
T |
|
| Q |
122 |
cctataaaacctaaatcctagtt |
144 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
44000675 |
cctataaaacctaaaccctagtt |
44000697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 278 - 459
Target Start/End: Complemental strand, 43687183 - 43687002
Alignment:
| Q |
278 |
ggaaccctatcatcaccttctctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgca |
377 |
Q |
| |
|
||||||||| ||||||| | ||| || |||||||| || || ||||||||||| |||||||| ||| |||||||||||| |||| || ||||| |
|
|
| T |
43687183 |
ggaaccctaacatcaccattactatcctttcttccgttcgaccttgtggaagaaatcttgtgtagactactggtgaagatacttttgcagctcaaatgca |
43687084 |
T |
|
| Q |
378 |
tctgcaagtcctggaaatctctaatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaagaagcgtctcat |
459 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||| ||| |||| |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
43687083 |
tctgcaagtcctggaaatctgtaatctcgaatgatcgtaaattctcaaagaagcaccttcgcatgtcaaagaaccatctcat |
43687002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 7432894 - 7432842
Alignment:
| Q |
347 |
ccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctct |
399 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
7432894 |
ccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattctct |
7432842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University