View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_low_8 (Length: 379)
Name: NF12757_low_8
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_8 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 14743197 - 14742818
Alignment:
| Q |
1 |
acctttttagataatcatatgatgttaattaataaatatttattcagcaggagcgacatgagaggtgcttttgtttctctaaatctaaatattcaaaatc |
100 |
Q |
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| T |
14743197 |
acctttttagataatcatatgatgttaattaataaatatttattcagcaggagcgacatgagaggtgcttttgtttctctaaatctaaatattcaaaatc |
14743098 |
T |
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| Q |
101 |
tccaaaacttaaggtgtt-cttatttcttgtactttgttctctattttgaattagtaattaatttgaaatttaatacatatcttatgctaaatgatattg |
199 |
Q |
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| T |
14743097 |
tccaaaacttaaggtgtttcttatttcttgtactttgttctctattttgaattagtaattaatttgaaatttaatacatatcttatgctaaatgatattg |
14742998 |
T |
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| Q |
200 |
ttttcgcctacagggtcttaaaggcattgcagaagaaacctacattcaagaaactgacacggactttagacaggttagcttccgattcaatcacatcaaa |
299 |
Q |
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| T |
14742997 |
ttttcgcctacagggtcttaaaggcattgcagaagaaacctacattcaagaaactgacacggactttagacaggttagcttccgattcaatcacatcaaa |
14742898 |
T |
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| Q |
300 |
tggtatgcataaccgtgagagttgagacaaagcgaagacagttgttgacgtttgaagtggcttaattttggttattcgag |
379 |
Q |
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| T |
14742897 |
tggtatgcataaacgtgagagttgagacaaagcaaagacagttgttgaggtttgaattggcttaattttggttattcgag |
14742818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 159 - 379
Target Start/End: Complemental strand, 14745969 - 14745760
Alignment:
| Q |
159 |
taatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaaaggcattgcagaagaaacctacattcaagaaactgaca |
258 |
Q |
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| T |
14745969 |
taatttgaaatttaatgcatatcttatgctaaatgatattgttttcacctgcagtgtcttaaaggcatcgc---agaaacctacattcaag-aactgaca |
14745874 |
T |
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| Q |
259 |
cggactttagacaggttagcttccgattcaatcacatcaaatggtatgcataaccgtgagagttgagacaaagcgaagacagttgttgacgtttgaagtg |
358 |
Q |
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| T |
14745873 |
cagacttcagacaggttagcttctgattctatcacatcaaatggtatacataa-------acctgagccaaatcaaagacggttgttgaggtgttaattg |
14745781 |
T |
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| Q |
359 |
gcttaattttggttattcgag |
379 |
Q |
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| T |
14745780 |
gcttaattttggttattcgag |
14745760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 14746168 - 14746082
Alignment:
| Q |
60 |
gagaggtgcttttgtttctctaaatctaaatattcaaaatctccaaaacttaaggtgttcttatttcttgtactttgttctctattt |
146 |
Q |
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| T |
14746168 |
gagaggtgcttttgtttctctaaatctaaatattcaagaattccaaaacttaaggtgttcttctttcttgtactttgttctctattt |
14746082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 307
Target Start/End: Original strand, 15052325 - 15052470
Alignment:
| Q |
159 |
taatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaaaggcattgcagaagaaacctacattcaagaaactgaca |
258 |
Q |
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| T |
15052325 |
taatttgaaatttaacacatattgtgtgctaaattatactgtttccacctacagggtcttaaatgcat--gag-agaaacctacattcaacaaaccaacg |
15052421 |
T |
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| Q |
259 |
cggactttagacaggttagcttccgattcaatcacatcaaatggtatgc |
307 |
Q |
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| T |
15052422 |
gagactttagacaggtcagcttccgatcctatcatatcagatgctatgc |
15052470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 34587552 - 34587484
Alignment:
| Q |
233 |
agaaacctacattcaagaaactgacacggactttagacaggttagcttccgattcaatcacatcaaatg |
301 |
Q |
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| T |
34587552 |
agaaatctacattcaagaaaccaccacggactctagacaggtcagcttcagatcctatcatatcaaatg |
34587484 |
T |
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