View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12758_high_2 (Length: 211)
Name: NF12758_high_2
Description: NF12758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12758_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 50671297 - 50671472
Alignment:
| Q |
20 |
aggataaaaatgtgtcatcgtacttcttcagaacaattgttgaaagttatcatggtaacccaatataacaacacgctctatttgatattttttagcaatc |
119 |
Q |
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| T |
50671297 |
aggataaaaatgtgtcattgtatttcttcagaacaattgttgaaagttatcatggtaacccaatataacaacacgctttatttgttattttttagcaatc |
50671396 |
T |
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| Q |
120 |
aatag-nnnnnnnnnnnnggcacaatcgcttattttttggttataatacttaaataattggttaagagtctgttct |
194 |
Q |
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| T |
50671397 |
aatagtttttttttttttggcacaatcgcttattttttggttataatacttaaataattgattaagagtctgttct |
50671472 |
T |
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