View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12758_low_1 (Length: 491)
Name: NF12758_low_1
Description: NF12758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12758_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 28249828 - 28250309
Alignment:
| Q |
1 |
tcaacggcgcggtaaagatcatcgtcgattttacgcgcgtgtttaggaataagaacagcgattccgttgaattttgagatgctgagttcaccgtacgcgg |
100 |
Q |
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| T |
28249828 |
tcaacggcgcggtaaagatcatcgtcgattttacgcgcgtgtttaggaataagaacagcgattccgttgaattttgagatgctgagttcaccgtacgcgg |
28249927 |
T |
|
| Q |
101 |
cgatttcagcgaggtacatatcgacggttttcgccacacgcagcatagggacggagaatgattgtttgagttctcccggtgtgaaaaccgctgtgnnnnn |
200 |
Q |
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| T |
28249928 |
cgatttcagcgaggtacatgtcgacggttttcgccacacgcagcatagggacggagaatgattgtttgagttctcccggtgtgaaaaccgctgtgttttt |
28250027 |
T |
|
| Q |
201 |
nnnnnnnncaacgaagactgagatgattctgcgaacgctttctagatcaaagagtttctcgccgtcgtaggagaatgacatcacgaggaggtcgtcgacg |
300 |
Q |
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| T |
28250028 |
ttctttttcaacgaagactgagatgattctgcgaacgctttctagatcaaagagtttctcgccgtcgtaggagaatgacatcacgaggaggtcgtcgacg |
28250127 |
T |
|
| Q |
301 |
gtaacgtgttcgaggattgccgagattcgtttctcgagttcggttttgcagacggtggaggcgcggaggtggatggcgcaacggaggaggcagcaaagga |
400 |
Q |
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| T |
28250128 |
gtaacgtgttcgaggattgccgagattcgtttctcgagttcggttttgcagacggtggaggcgcggaggtggatggcgcaacggaggaggcagcaaagga |
28250227 |
T |
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| Q |
401 |
agttgattggaaaagctgctttctctgaagggaagagattgataattaactgtagaaggcttcgttgttttgatctgatgtc |
482 |
Q |
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| T |
28250228 |
agttgattggaaaagctgctttctccgaagggaagagattgataattaactctagaaggcttcgttgttttgatctgatgtc |
28250309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 438
Target Start/End: Original strand, 32179628 - 32179846
Alignment:
| Q |
220 |
gagatgattctgcgaacgctttctagatcaaagagtttctcgccgtcgtaggagaatgacatcacgaggaggtcgtcgacggtaacgtgttcgaggattg |
319 |
Q |
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||||||||||| |||| ||| || ||||| | || ||||||||||||||| |||||||| || | ||| |||| || || |||||||| || ||| |
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| T |
32179628 |
gagatgattctccgaatgctatcaagatccagaagcctctcgccgtcgtaggtgaatgacagaaccaagagatcgttcactgttacgtgttccagaattt |
32179727 |
T |
|
| Q |
320 |
ccgagattcgtttctcgagttcggttttgcagacggtggaggcgcggaggtggatggcgcaacggaggaggcagcaaaggaagttgattggaaaagctgc |
419 |
Q |
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| T |
32179728 |
cagctattcgcttctcgagttcgcgcttgcacgcgcttgaggcgcgtaggtagatagcacaacggagaagacagcagaggaagttgatcggaaaagcagc |
32179827 |
T |
|
| Q |
420 |
tttctctgaagggaagaga |
438 |
Q |
| |
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|||||| || || |||||| |
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| T |
32179828 |
tttctccgacggaaagaga |
32179846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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