View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12758_low_3 (Length: 281)
Name: NF12758_low_3
Description: NF12758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12758_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 28594993 - 28594738
Alignment:
| Q |
18 |
attgttgttaacgagattgatgagaatgagagaatgttgaagaaat----gatattggttgatggagaagaggatgtgagttctcaagaatttatagaat |
113 |
Q |
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| T |
28594993 |
attgttgttaacgagattgatgagaatgaga--atgttgaagaaattaatgatattggttgatggagaagaggatttgagttctcatgaatttatagaat |
28594896 |
T |
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| Q |
114 |
gcatacatatgtgtttgttgtatgagaatattgagaatatttcatggtcactaatgatggccgctgcaagttgcaacgcggttcattgatgataaattaa |
213 |
Q |
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| T |
28594895 |
gcatacatatgtgtttgttgtatgagaatattgagaatatttcatggtcactaatgatggccgctgcaagttgcaacgcggttcattgatgataaattta |
28594796 |
T |
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| Q |
214 |
gatgaaagctttaatattttggttttgacaatatattatagtgaccagttctcctttg |
271 |
Q |
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| T |
28594795 |
gatgaaagctttaatattttggttttgacaatatattatagtgaccagttctcctttg |
28594738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 32493191 - 32493109
Alignment:
| Q |
62 |
atgatattggttgatggagaagaggatgtgagttctcaagaatttatagaatgcatacatatgtgtttgttgtatgagaatatt |
145 |
Q |
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| T |
32493191 |
atgatattggttgatggagaagagggtatgagttctcatcaatttatagaatgcatacatat-agtttgtagtataagaatatt |
32493109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 28592984 - 28593046
Alignment:
| Q |
55 |
tgaagaaatgatattggttgatggagaagaggatgtgagttctcaagaatttatagaatgcat |
117 |
Q |
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| T |
28592984 |
tgaagagatgatattggttgatggagaagagggtacgagttctcatcaatttatagcatgcat |
28593046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 28587775 - 28587808
Alignment:
| Q |
62 |
atgatattggttgatggagaagaggatgtgagtt |
95 |
Q |
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| T |
28587775 |
atgatattggttgatggagaagagggtgtgagtt |
28587808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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