View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_high_7 (Length: 253)
Name: NF12759_high_7
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4236027 - 4235785
Alignment:
| Q |
1 |
ttgtataacaagcattgtagcattccacatgagctacattgttgggggctgcactgttattaccatggtcacttcctttgttgattattttttcatatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236027 |
ttgtataacaagcattgtagcattccacatgagctacattgttgggggctgcactgttattaccatggtcacttcctttgttgattattttttcatatga |
4235928 |
T |
|
| Q |
101 |
atctcttacattattaatggaattactaccatgttgtctaggctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4235927 |
atctcttacattattaatggaattactaccatgttgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattc |
4235828 |
T |
|
| Q |
201 |
ataccaagatggtattgatgcatcacccaattagtcttctctg |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235827 |
ataccaagatggtattgatgcatcacccaattagtcttctctg |
4235785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 38887183 - 38887074
Alignment:
| Q |
134 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
233 |
Q |
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||||||||||||||| |||||||| | || ||| | || ||||| || ||| | || |||||||| | |||||||||||||| ||||| |||||||| |
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| T |
38887183 |
ttgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcataacccaattt |
38887084 |
T |
|
| Q |
234 |
gtcttctctg |
243 |
Q |
| |
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|| ||||||| |
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| T |
38887083 |
gttttctctg |
38887074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 6589015 - 6589159
Alignment:
| Q |
53 |
actgttattaccatggtcacttcctttgttgattatttttt-catatgaatctcttacattattaatggaattactaccatgttgtctaggctgtgtctg |
151 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
6589015 |
actgttattaccatggccacttcctttgttcattatttttttcttatgaatctcttacattattaatggaattacga---tgttgtctaggctgtgtctg |
6589111 |
T |
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| Q |
152 |
gtagaagatctttgaagcaacaaattctccatctctttcttcttcatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6589112 |
gtagaagatctttgaagcaacaaattctccatctatttcttcttcatt |
6589159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 34829843 - 34829950
Alignment:
| Q |
134 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
233 |
Q |
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|
||||| ||| ||||| ||||| || | ||||||| |||| ||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
34829843 |
ttgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattg |
34829942 |
T |
|
| Q |
234 |
gtcttctc |
241 |
Q |
| |
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|||||||| |
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|
| T |
34829943 |
gtcttctc |
34829950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 28948724 - 28948805
Alignment:
| Q |
160 |
tctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattagtcttctc |
241 |
Q |
| |
|
|||||||| |||| ||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
28948724 |
tctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctc |
28948805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 43015297 - 43015191
Alignment:
| Q |
135 |
tgtctaggctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattag |
234 |
Q |
| |
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||||| ||||||||||| || || ||||||||| |||||| ||||| ||| | |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
43015297 |
tgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcg |
43015198 |
T |
|
| Q |
235 |
tcttctc |
241 |
Q |
| |
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||||||| |
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|
| T |
43015197 |
tcttctc |
43015191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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