View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_high_9 (Length: 250)
Name: NF12759_high_9
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 27239880 - 27240108
Alignment:
| Q |
19 |
accgattcattctcatggcgacatttcttcaactctaattgatacaaaaccaaatcatgttccaattcctcagctcgcaaacacgcctccctcgctcgct |
118 |
Q |
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| T |
27239880 |
accgattcattctcatggcgacatttcttcaactccaattgatacaaaaccaaatcacgttccaattcctcagctcgcaaacacgcctccctcgctcgtt |
27239979 |
T |
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| Q |
119 |
cttcagcttcgttctgaaaatcaatcaacgcttctctatcattatcatacaacgcacattccttctccagttttctacaatgccccaacagattctcaca |
218 |
Q |
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| T |
27239980 |
cttcagcttcattctgaaaatcaatcaacgcttctctatcattatcatacaacgcacattccttctccagttttctacaatgccccaacagattctcaca |
27240079 |
T |
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| Q |
219 |
ctccgccgccaatctctgctcctcctcaa |
247 |
Q |
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| T |
27240080 |
ctccgccgccaatttctgattctcctcaa |
27240108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 231
Target Start/End: Original strand, 27217383 - 27217547
Alignment:
| Q |
66 |
aaccaaatcatgttccaattcctcagctcgcaaacacgcctccctcgctcgctcttcagcttcgttctgaaaatcaatcaacgcttctctatcattatca |
165 |
Q |
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|||||||||| |||||| || |||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| | || ||||||||||| |
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| T |
27217383 |
aaccaaatcacattccaactcttcagctcgcaaacaatcctccctcgctcgttcttcagcttcattctgaaaatcaatcaacacatccttatcattatca |
27217482 |
T |
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| Q |
166 |
tacaacgcacattccttctccagttttctacaatgccccaacagattctcacactccgccgccaat |
231 |
Q |
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| T |
27217483 |
taaagcgcacattccttttcca-aattcgataatgtcccaatagattctcagactctgccgccaat |
27217547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 27201647 - 27201751
Alignment:
| Q |
58 |
tgatacaaaaccaaatcatgttccaattcctcagctcgcaaacacgcctccctc-gctcgctcttcagcttcgttctgaaaatcaatcaacgcttctcta |
156 |
Q |
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||||||| || ||||||| |||||| || |||||||| ||||| | ||||||| ||||| ||||||||||| ||| ||||||||| ||| ||||| ||| |
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| T |
27201647 |
tgatacataatcaaatcacattccaactcttcagctcgtaaacatgtctccctcagctcgttcttcagcttcattcagaaaatcaa-caatgcttcccta |
27201745 |
T |
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| Q |
157 |
tcatta |
162 |
Q |
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|||||| |
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| T |
27201746 |
tcatta |
27201751 |
T |
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