View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_low_1 (Length: 530)
Name: NF12759_low_1
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 15 - 515
Target Start/End: Original strand, 18163946 - 18164446
Alignment:
| Q |
15 |
tggacatcaagagagaggtagagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattc |
114 |
Q |
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| T |
18163946 |
tggacaacaagagagaggtagagacgccacatctccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattc |
18164045 |
T |
|
| Q |
115 |
atagacgatctgaacttaaccactcacaagtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaa |
214 |
Q |
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| T |
18164046 |
atagacgatgtgaacttaaccactcacacgtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaa |
18164145 |
T |
|
| Q |
215 |
aacaaccagagctagcaacaagtttgattattatgtagttttgtattgtttctttcattcctttgggtgtgcattcattatgatctgcatctagtataag |
314 |
Q |
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| T |
18164146 |
aacaaccagagctagcaacaagtttgattattatgtagttttgtattgtttctttcattcctttgggtgtgcattcattatgatctgcatctagtataag |
18164245 |
T |
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| Q |
315 |
catgaaaagaaattttcaaaattattgcatagtaaaaggagattagcaacatctccaatgagattttatgtaatctgtgtgtatctgaatactataaatt |
414 |
Q |
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| T |
18164246 |
catgaaaagaaattttcaaaattattgcatagtaaaaggagattagcaacatctccaatgagattttatgtaatctgtgtgtatctgaatactataaatt |
18164345 |
T |
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| Q |
415 |
ctagttttatatctaaactattaactcaaagtttcattgtcgccggaaagaaaaaacagatgatcaccatctcgaatgacgcaaagttcatctatctctg |
514 |
Q |
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| T |
18164346 |
ctagttttatatctaaactattaactcaaagtttcattgtcgccggaaagaaaaaacagatgatcaccatctcgaatgacgcaaagttcatctatctctg |
18164445 |
T |
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| Q |
515 |
c |
515 |
Q |
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| T |
18164446 |
c |
18164446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 11200038 - 11199982
Alignment:
| Q |
35 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
91 |
Q |
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| T |
11200038 |
gagacgccacatctccacccaaaaccttaaggcattaggcatatgagtcacctctct |
11199982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 28296070 - 28296126
Alignment:
| Q |
35 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
91 |
Q |
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| T |
28296070 |
gagacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctct |
28296126 |
T |
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