View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_low_10 (Length: 261)
Name: NF12759_low_10
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 29631638 - 29631766
Alignment:
| Q |
111 |
ctcagcagctagctattgcaatacaacggactgtgataacgctggaaacgacaaacacacgtcgttttcagatctcggactctcggaatggatggtgcgg |
210 |
Q |
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| T |
29631638 |
ctcagcagctagctattgtaatacaacggactgtgataacgctggaaacgacaaacacatgtcgttttcagatctaggactctcggaatggatggtgcgg |
29631737 |
T |
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| Q |
211 |
ggttgcgataaactcgggatgcaatctcc |
239 |
Q |
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| T |
29631738 |
ggttgcgataaactcgggatgcaatctcc |
29631766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29631539 - 29631603
Alignment:
| Q |
12 |
aacctgtgagtcgcactctctcctttccctttcttccttcctggtcaaccgtaacagcttacttc |
76 |
Q |
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| T |
29631539 |
aaccagtgagtcgcactctctcctttccctttcttccttcctggtcaaccgtaacagcttacttc |
29631603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 28390281 - 28390248
Alignment:
| Q |
174 |
gttttcagatctcggactctcggaatggatggtg |
207 |
Q |
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| T |
28390281 |
gttttcagatctcggactctcagaatggatggtg |
28390248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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