View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_low_12 (Length: 251)
Name: NF12759_low_12
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 4236037 - 4236276
Alignment:
| Q |
3 |
atatgcatgttggtcatagtagggaaagtactccacaactgattataccaaacatggctgttcaaagtaatggaactattattcccttatcaatggatca |
102 |
Q |
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| T |
4236037 |
atatgcatgttggtcatagtagggaaagcactccacaactgattataccaaacatggctgttcaaagtaatggaactattattcccttatcaatggatca |
4236136 |
T |
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| Q |
103 |
tgcaaacaaagtaagagtgctggagagaaagtaacattggaagagcttcttggtagaccaacagtgattcttttgctaattttactaatcagataaccat |
202 |
Q |
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| T |
4236137 |
tgcaaacaaagtaagagtgctggagagaaagtaacattggaagagcttcttggtagaccaacagtgattcttttactaattttactaatcagataaccat |
4236236 |
T |
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| Q |
203 |
ttacatttatgtattatatggtggatttattgatgtccat |
242 |
Q |
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| T |
4236237 |
ttacatttatgtattatatggtggatttatttatgtccat |
4236276 |
T |
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Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 6588984 - 6588785
Alignment:
| Q |
4 |
tatgcatgttggtcatagtagggaaagtactccacaactgattataccaaacatggctgttcaaagtaatggaactattattcccttatcaatggatcat |
103 |
Q |
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| T |
6588984 |
tatgcatgttggtcatagtaggga--------cacaaataattattccaaacatggctgtccaaggtgatggaactattattcgcttatcaatggatcat |
6588893 |
T |
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| Q |
104 |
gcaaacaaagtaagagtgctggagagaaagtaacattggaagagcttcttggtagaccaacagtgattcttttgctaattttactaatcagataaccatt |
203 |
Q |
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| T |
6588892 |
gcaaacaaagtaagagtaccggagagaaagtagcattgaaagagtttcttggtagaacaacagtgattcttttaccaa--ttacaaatcagataaccatt |
6588795 |
T |
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