View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12759_low_15 (Length: 249)
Name: NF12759_low_15
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 28139182 - 28139331
Alignment:
| Q |
1 |
aatttttaaaccaacttcgtgacatacaaagttgattattaaattattattgatcacgaaagagagagaacatatgaaggaagtttcggaatggtcattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28139182 |
aatttttaaaccaacttcgtgacatacaaagttgattattaaattattattgatcacgaaagagagagaacatatgaaggaagtttcggaatggtcattg |
28139281 |
T |
|
| Q |
101 |
gtcatatatcacatacggattctccaaagtataaccgttgaccattatca |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28139282 |
gtcatatatcacatacggattctccaaagtataaccgttgaccattatca |
28139331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 28139381 - 28139421
Alignment:
| Q |
200 |
ggctttgcaaccaccttcttcttctacttctttctcctatg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28139381 |
ggctttgcaaccaccttcttcttctacttctttctcctatg |
28139421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University