View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_low_16 (Length: 240)
Name: NF12759_low_16
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 13333884 - 13334093
Alignment:
| Q |
19 |
tcagctactgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctgg |
118 |
Q |
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| T |
13333884 |
tcagctactgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctgg |
13333983 |
T |
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| Q |
119 |
taacttatctaaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctattctgcccgaatatgtccttgttggtttctccgg |
218 |
Q |
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| T |
13333984 |
taacttatctaaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctattctgcccgaatatgtcctggttggtttctccgg |
13334083 |
T |
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| Q |
219 |
tgccacaggt |
228 |
Q |
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| T |
13334084 |
tgccacaggt |
13334093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 13308730 - 13308836
Alignment:
| Q |
33 |
atggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctggtaacttatctaaat |
132 |
Q |
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| T |
13308730 |
atggccaatcgatcgtcaacctcaaggaacgataggaaaggctcgcataagttataatactgcctcaaaagacttgagtgtatttgtaacttatccaaat |
13308829 |
T |
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| Q |
133 |
ggtcctg |
139 |
Q |
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| T |
13308830 |
agtcctg |
13308836 |
T |
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