View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_low_2 (Length: 396)
Name: NF12759_low_2
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 9003862 - 9003491
Alignment:
| Q |
12 |
caaagggcctagcaaaccttccataattattattgtaatttgcttcataattctcttccttgcaaccccttcccatttgttgaagtatttgctccaaagc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9003862 |
caaaaggcctagcaaaccttccataattattattgtaatttgcttcataattctcttccttgcaaccccttcccatttgttgaagtatttgctccaaagc |
9003763 |
T |
|
| Q |
112 |
tccttcatcacaagtatcatacaagtgatggcttcttcttccctctccagaagggctgtctagggttttgagatgattcttcttcttgaatatcctacac |
211 |
Q |
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| T |
9003762 |
tccttcatcacaagtatcatacaagtgatggcttcttcttccctctccagaagggctgtctagggttttgagatgattcttcttcttgaatatcctacac |
9003663 |
T |
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| Q |
212 |
accacccatccttcttcttgaccaccatcaccaatcatattcgacacctaagatttcgttgcaataaac--aacaatttagccaatttattttctatata |
309 |
Q |
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| T |
9003662 |
accacccatccttcttcttgaccaccatcaccaatcatattcgacacctaaaatttcgtcgcaataaacaaaacaatttaaccaatttattttctatata |
9003563 |
T |
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| Q |
310 |
aatatatacataagtatcattcaacaaagtgcttgattaagttgtttatccagacgtatatttgtatcaaat |
381 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9003562 |
aatatatacataagtatcattcagcgaagtgcttgattaagttgtttatccagacgtatatttgtatcaaat |
9003491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 364
Target Start/End: Original strand, 17775541 - 17775569
Alignment:
| Q |
336 |
aagtgcttgattaagttgtttatccagac |
364 |
Q |
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| T |
17775541 |
aagtgcttgattaagttgtttatccagac |
17775569 |
T |
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