View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_low_3 (Length: 359)
Name: NF12759_low_3
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 33824417 - 33824741
Alignment:
| Q |
13 |
aaggtcatcaacaactttccctagtaacagtgttggtgatatttcatcttcaccaacggtattactagggaacgcggcttcaaattcttcgtctatatcc |
112 |
Q |
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| T |
33824417 |
aaggtcatcaacaactttccctagtaacagtgttggtgatatttcatcttcaccaacggtattactagggaacgcggcttcaaattcttcgtctatatcc |
33824516 |
T |
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| Q |
113 |
aacattttggagacaacttcagttactggtggtgaattagggtactggaatccaattccaacccttacttggtctgatcttccaactaccaatggtgcaa |
212 |
Q |
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| T |
33824517 |
aacattttggagacaacttcagttactggtggtgaattagggtactggaatccaattccaacccttacttggtctgatcttccaactaccaatggtgcaa |
33824616 |
T |
|
| Q |
213 |
ttcaaacccaatatcagtaataagtgtaactacgtgttctttttcttttgttgaccggtcaaatcttcttttaccattacatagtagcataggttttgct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824617 |
ttcaaacccaatatcagtaataagtgtaactacgtgttctttttcttttgttgaccggtcaaatcttcttttaccattacatagtagcataggttttgct |
33824716 |
T |
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| Q |
313 |
ccttaattctatcttagagtttgta |
337 |
Q |
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||||||||||||||||||||||||| |
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| T |
33824717 |
ccttaattctatcttagagtttgta |
33824741 |
T |
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