View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12759_low_5 (Length: 324)
Name: NF12759_low_5
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 41473549 - 41473850
Alignment:
| Q |
19 |
acatcgactgtcttctgcaggaactcaattctgattggcaacgagcagcaacaagcctacttgttgcgatagggtcacatttacctgaccttgtaagtta |
118 |
Q |
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| T |
41473549 |
acatcgactgtcttctgcaggaactcaattctgattggcaacgagcagcaacaagcctacttgttgcgatagggtcacatttacctgaccttgtaagtta |
41473648 |
T |
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| Q |
119 |
ttctttttcgttgaactattaaggattatttagtattagtaggcatttttagtatcatgnnnnnnnagttcaataagaaaggaaaaataaggttataggt |
218 |
Q |
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| T |
41473649 |
ttctttttcgttgaactattaaggattatttagtattaataggcatttttagtatcatgtttttttagttcaataagaaaggaaaaataaggttataggt |
41473748 |
T |
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| Q |
219 |
ctagaggcagacaagacaaagggatcaaaagaatgaagccctacattctctttgatttccagttaaataaatctaattagaatatcatttacaagctcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41473749 |
ctagaggcagacaagacaaagggatcaaaagaatgaagccctacattctctttgatttccagttaaataaatctaattagaatatcatttacaagctcca |
41473848 |
T |
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| Q |
319 |
ta |
320 |
Q |
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|| |
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| T |
41473849 |
ta |
41473850 |
T |
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