View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12759_low_6 (Length: 300)
Name: NF12759_low_6
Description: NF12759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12759_low_6 |
 | |
|
| [»] scaffold0274 (1 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: scaffold0274 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 14134 - 14419
Alignment:
| Q |
15 |
cctcctcaaactgtaaaaatataccttaaccagggttgatgccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaatta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14134 |
cctcctcaaactgtaaaaatataccttaaccagggttgatgccactacaattgcggtctagttcctgcacagttgcagttgcagccatgatccttaatta |
14233 |
T |
|
| Q |
115 |
gggtagatgctagtatgctaccgcaattgtgatcgcggctgcatacatcaaaaacctaatgttgcactaaaaatcacagccctgatcagtttttaaaacc |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14234 |
gggttgatgctagtatgctaccgcaattgtgatcgcggctgcatatatcaaaaacctaatgttgcagtaaaaatcacagccctgatcagtttttaaaacc |
14333 |
T |
|
| Q |
215 |
attcatattcccatcatacaatagcctaaatttaaaccctaaaccataaacaacatatcgaaaaggttaactgccctatgcttctc |
300 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
14334 |
attcatattcctatcatacaacagcctaaatttaaaccctaaaccataaacaacatatcgaaaaggttaactgcccgatacttctc |
14419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 300
Target Start/End: Complemental strand, 41430726 - 41430464
Alignment:
| Q |
38 |
ccttaaccagggttgatgccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaattagggtagatgctagtatgctaccg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41430726 |
ccttaaccagggttgatgccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaattagggttgatgctagtatgctaccg |
41430627 |
T |
|
| Q |
138 |
caattgtgatcgcggctgcatacatcaaaaacctaatgttgcactaaaaatcacagccctgatcagtttttaaaaccattcatattcccatcatacaata |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |
|
|
| T |
41430626 |
caattgtgatcgcggctgcatacatcaaaaacctaatgttgcagtaaaaatcacagccctgataagtttttaaaatcattcatattcccatcatacaaca |
41430527 |
T |
|
| Q |
238 |
gcctaaatttaaaccctaaaccataaacaacatatcgaaaaggttaactgccctatgcttctc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
41430526 |
gcctaaatttaaaccctaaaccataaacaacatatcgaaaaggttaactgcccgatacttctc |
41430464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 41430789 - 41430724
Alignment:
| Q |
15 |
cctcctcaaactgtaaaaatataccttaaccagggttgatgccactacaattgcggtctagttcct |
80 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| |||| |||||||||| ||||||||||| |
|
|
| T |
41430789 |
cctcctcaaactgtaaaaatatactttaattagggttaatgctactacaattgtagtctagttcct |
41430724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 41440231 - 41440188
Alignment:
| Q |
241 |
taaatttaaaccctaaaccataaacaacatatcgaaaaggttaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
41440231 |
taaatttaaaccctaaaccataaacaacatatccaaagggttaa |
41440188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 41440309 - 41440228
Alignment:
| Q |
132 |
ctaccgcaattgtgatcgcggctgcatacatcaaaaacct-aatgttgcactaaaaatcacagccct-gatcagtttttaaa |
211 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||||||||||| ||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
41440309 |
ctactgcaattgcgatcgcggctgcatgcatcaaaaacctaaatgttgcagccacaatcacagccctagatcaatttttaaa |
41440228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 33368505 - 33368368
Alignment:
| Q |
90 |
cagttgcagccatgatccttaattagggtagatgctagtatgctaccgcaattgtgatcgcggctgcatacatcaaaaacct-aatgttgcactaaaaat |
188 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
|
|
| T |
33368505 |
cagtcgcagccatgatccttaattagggttgatgctagtatgctaccgcaattgtgatcgcggctgcatacatcaaaaacctaaatgttgcagccataat |
33368406 |
T |
|
| Q |
189 |
cacagccctgatcagtttttaaaaccattcatattcccat |
228 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
33368405 |
cacagccc--atcagtttttaaaaccatccagattcccat |
33368368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University