View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275R-Insertion-10 (Length: 679)

Name: NF1275R-Insertion-10
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275R-Insertion-10
NF1275R-Insertion-10
[»] chr1 (5 HSPs)
chr1 (9-543)||(24606632-24607181)
chr1 (139-190)||(6128011-6128062)
chr1 (139-192)||(9570644-9570696)
chr1 (584-621)||(24607247-24607284)
chr1 (146-190)||(4824978-4825022)
[»] chr3 (3 HSPs)
chr3 (139-176)||(14270564-14270601)
chr3 (139-229)||(8027715-8027805)
chr3 (149-189)||(40372152-40372192)
[»] chr5 (1 HSPs)
chr5 (138-180)||(31669059-31669101)
[»] scaffold0016 (1 HSPs)
scaffold0016 (137-190)||(77618-77671)
[»] chr8 (2 HSPs)
chr8 (146-175)||(31632430-31632459)
chr8 (146-190)||(9938001-9938045)
[»] chr4 (3 HSPs)
chr4 (139-180)||(6606058-6606099)
chr4 (139-183)||(10538806-10538850)
chr4 (138-190)||(44865333-44865385)
[»] scaffold0197 (1 HSPs)
scaffold0197 (135-179)||(11550-11594)
[»] chr2 (1 HSPs)
chr2 (138-190)||(41908663-41908715)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 543
Target Start/End: Original strand, 24606632 - 24607181
Alignment:
Q  9 caaataccatacaacttagaaggaagttttccatactataaaaatatacagtaatat--gtaaggatttgacagcaatttctcaccaattcagataagaa 106  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24606632 caaataccatgcaacttagaaggaagttttctatactataaaaatatacagtaatatatgtaaggatttgacagcaatttctcaccaattcagataagaa 24606731  T
Q  107 acgcataattcgcatcatttatggatcggaataacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctcttttaaacgtattcga 206  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||| |||    
T  24606732 acggataattcgtatcatttatggatcggaataacccaattgggttggtttgatggtgttagtttgagaccttgaagcatgcccttttaaacgtatccga 24606831  T
Q  207 ttcttccagatgccattttcggtgggttaggttgactttttcaagaaaaaagagttatcccatgcatggtgcttgtgcgtgcatgcttgatcttttccat 306  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    |||||||||||| |||||||||    
T  24606832 ttcttcctgatgccattttcggtgggttaggttgactttttcaag--aaaagagttatcccatgcatggtgctt----gtgcatgcttgaccttttccat 24606925  T
Q  307 ataaaatgcaaggctcattgtcatagcttga--------------aacat--caacaattgtggtagaaaaaggaaacaatgccattatttccatagact 390  Q
    | |||||||||||||||||||||||||| ||              |||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  24606926 aaaaaatgcaaggctcattgtcatagctagaggcataccttttagaacataacaacaattgtggtagaaaaatgaaacaatgccattatttccatagact 24607025  T
Q  391 caatacgagaaaca---cctaaataactcaaacgaggaacctcatctggttcacgtgctagattaagtatttaatgtaggatattgtcaaactcaaccaa 487  Q
    ||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| || |||||||||    
T  24607026 caatacgagaaacaccccctaaataactcaaacgaggaacctcatatggttcacgtgctagattaagtatttgatgttggatattgttaagctcaaccaa 24607125  T
Q  488 acccacaataaaaccatgcttttcaatggaattagcttgcatttgtaaggactgat 543  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24607126 agtcacaataaaaccatgcttttcaatggaattagcttgcatttgtaaggactgat 24607181  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 6128062 - 6128011
Alignment:
Q  139 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 190  Q
    ||||||| || ||||||||| ||||||||||||| ||||||| |||||||||    
T  6128062 aacccaaatgtgttggtctggtggtgttggtttgggaccttggagcgtgctc 6128011  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 9570644 - 9570696
Alignment:
Q  139 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctctt 192  Q
    |||||| ||||||||| ||||||||||||| ||||||||||| || ||||||||    
T  9570644 aacccacttgggttgg-ctgatggtgttggcttgagaccttggagtgtgctctt 9570696  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 621
Target Start/End: Original strand, 24607247 - 24607284
Alignment:
Q  584 attctttataccaattagctactccaaatttctcaata 621  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  24607247 attctttataccaattagctattccaactttctcaata 24607284  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 4824978 - 4825022
Alignment:
Q  146 ttgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 190  Q
    ||||||||||||||||||||||| ||| ||||||| || ||||||    
T  4824978 ttgggttggtctgatggtgttggcttgggaccttggagtgtgctc 4825022  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 14270601 - 14270564
Alignment:
Q  139 aacccaattgggttggtctgatggtgttggtttgagac 176  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14270601 aacccaattgggttggcctgatggtgttggtttgagac 14270564  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 8027805 - 8027715
Alignment:
Q  139 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctcttttaaacgtattcgattcttccagatgccattttcggt 229  Q
    |||||| |||||||||| |||||||||||||||  |||||||||  |||||| |||   | ||||||||||||| | ||| || |||||||    
T  8027805 aacccacttgggttggtttgatggtgttggtttaggaccttgaaatgtgctccttttctcatattcgattcttctaaatgtcaatttcggt 8027715  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 40372152 - 40372192
Alignment:
Q  149 ggttggtctgatggtgttggtttgagaccttgaagcgtgct 189  Q
    ||||||||||||||| |||||||| |||||||||| |||||    
T  40372152 ggttggtctgatggtattggtttgggaccttgaagggtgct 40372192  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 31669101 - 31669059
Alignment:
Q  138 taacccaattgggttggtctgatggtgttggtttgagaccttg 180  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  31669101 taacccacttgggttggtctgatggtgttggcttgggaccttg 31669059  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 77618 - 77671
Alignment:
Q  137 ataacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 190  Q
    |||||||| |||| |||||||||||||||||||||| ||| ||| || ||||||    
T  77618 ataacccacttggattggtctgatggtgttggtttgggactttggagtgtgctc 77671  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 31632459 - 31632430
Alignment:
Q  146 ttgggttggtctgatggtgttggtttgaga 175  Q
    ||||||||||||||||||||||||||||||    
T  31632459 ttgggttggtctgatggtgttggtttgaga 31632430  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 9938045 - 9938001
Alignment:
Q  146 ttgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 190  Q
    |||||||||||| ||||| |||||||| |||||||||| ||||||    
T  9938045 ttgggttggtctaatggtattggtttgggaccttgaagtgtgctc 9938001  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 6606058 - 6606099
Alignment:
Q  139 aacccaattgggttggtctgatggtgttggtttgagaccttg 180  Q
    |||||| ||||||||||||||||||||||| ||| |||||||    
T  6606058 aacccacttgggttggtctgatggtgttggcttgggaccttg 6606099  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 10538806 - 10538850
Alignment:
Q  139 aacccaattgggttggtctgatggtgttggtttgagaccttgaag 183  Q
    |||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  10538806 aacccacttgagttggtctggtggtgttggcttgagaccttgaag 10538850  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 44865333 - 44865385
Alignment:
Q  138 taacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 190  Q
    ||||||| ||||||||| ||||||||||||| ||||| |||||| | ||||||    
T  44865333 taacccacttgggttggcctgatggtgttggcttgagtccttgatgtgtgctc 44865385  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 11594 - 11550
Alignment:
Q  135 gaataacccaattgggttggtctgatggtgttggtttgagacctt 179  Q
    |||||||||||||||||||||||||| | ||||  ||||||||||    
T  11594 gaataacccaattgggttggtctgatagcgttgacttgagacctt 11550  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 41908715 - 41908663
Alignment:
Q  138 taacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 190  Q
    ||||||| ||||||||| ||| |||||| |||||||||||||| || ||||||    
T  41908715 taacccacttgggttggcctggtggtgtcggtttgagaccttggagtgtgctc 41908663  T

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