View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275R-Insertion-11 (Length: 720)
Name: NF1275R-Insertion-11
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275R-Insertion-11 |
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Alignment Details
Target: chr7 (Bit Score: 631; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 9 - 715
Target Start/End: Complemental strand, 35449371 - 35448671
Alignment:
| Q |
9 |
gaatccaatttatcttatgagttgaataatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcaga |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
35449371 |
gaatccaatttatcttatgagttgaataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcaga |
35449272 |
T |
|
| Q |
109 |
acacgaacatgggctttcaacaaggaattaatgagggaacagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtactgatgaaaa |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35449271 |
acacgaacatgggctttcaacaaggaattaatgagggaatagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtattgatgaaaa |
35449172 |
T |
|
| Q |
209 |
tgtcctggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcat |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449171 |
tgtcctggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcat |
35449072 |
T |
|
| Q |
309 |
ggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35449071 |
ggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagtt |
35448972 |
T |
|
| Q |
409 |
cttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggtggatcatc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
35448971 |
cttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctatagtaatggtggatcatc |
35448872 |
T |
|
| Q |
509 |
atttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggattttgcagcaaggagtttaatgggcaga |
608 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
35448871 |
atttcatatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatgga-tttgcagcaaggag-ttaatgggcaga |
35448774 |
T |
|
| Q |
609 |
tggccatagtacaacctgaatattcaagtttttcctcacatgtctggtgctgatagaaatgcccgtggagaccgggctcaaatgtcccgcgatgcttcag |
708 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
35448773 |
tggccatagtacaacctgaatattcaag-ttttcctcacatgtctggtgctgatagaaatg-ccgtggagacc-ggctcaaatgt-ccgcgatgcttcag |
35448678 |
T |
|
| Q |
709 |
ctatgcc |
715 |
Q |
| |
|
||||||| |
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|
| T |
35448677 |
ctatgcc |
35448671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 55 - 489
Target Start/End: Complemental strand, 35449094 - 35448666
Alignment:
| Q |
55 |
gtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatgagggaacagccat |
154 |
Q |
| |
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|||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| | ||||| |
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|
| T |
35449094 |
gtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccat |
35448995 |
T |
|
| Q |
155 |
atcagaacctgaatatccaagttcttctactcgcatgtttggtactgatgaaaatgtcctggaggcctgcccaattgtcggcaatacatcagctacgcca |
254 |
Q |
| |
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| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||| |||||||||||||| | ||| ||||||||| |||| |
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| T |
35448994 |
aacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgcca |
35448895 |
T |
|
| Q |
255 |
atctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggtt |
354 |
Q |
| |
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|||| || ||| ||| |||||| |||||| ||||||||| ||||||||||| |||||| ||| |||||||||| ||||||||||||| ||||||| || |
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|
| T |
35448894 |
atctatagtaatggt---ggatcatcatttcatatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatt |
35448798 |
T |
|
| Q |
355 |
ttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctg |
454 |
Q |
| |
|
| || |||||| |||||||| |||||||||| | ||||||||||| |||||| | ||| ||||| ||||| |||| ||||| | |||||||| | |
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|
| T |
35448797 |
tgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaagttttcctca---catgtctggtgctgatagaaatgccgtggagaccgg |
35448701 |
T |
|
| Q |
455 |
cccaattgtcaggaatgcatcagctatgccaatct |
489 |
Q |
| |
|
| ||| |||| | |||| |||||||||||||||| |
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|
| T |
35448700 |
ctcaaatgtccgcgatgcttcagctatgccaatct |
35448666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 35441087 - 35440925
Alignment:
| Q |
273 |
ggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatg |
372 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||||||||||| || |||||||| || || ||||||||| ||||||||| | ||||||||| |||||| |
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| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
|
| Q |
373 |
gggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatg |
435 |
Q |
| |
|
|||| ||| ||||| | ||||||| || |||||| ||||||| ||||||||||| ||||| |
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| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatg |
35440925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 667
Target Start/End: Complemental strand, 35441087 - 35440921
Alignment:
| Q |
501 |
ggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggattttgcagcaaggagtttaa |
600 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||| ||||||||| ||||||| | || ||||||||||||||||| | |||| ||||||| |||| |
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| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgg-gtatgcaacaaggag-ttaa |
35440990 |
T |
|
| Q |
601 |
tgggcagatggccatagtacaacctgaatattcaagtttt--tcctcacatgtctggtgctgatagaaa |
667 |
Q |
| |
|
|||| ||| ||||| ||||||| ||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
35440989 |
tgggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatggaaa |
35440921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 442
Target Start/End: Complemental strand, 35440850 - 35440702
Alignment:
| Q |
294 |
gatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaac |
393 |
Q |
| |
|
||||||| || ||| |||||| || |||||||| ||||| ||| ||| | ||||||||| | ||||||||||| ||||| |||||| || | || ||| |
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|
| T |
35440850 |
gatatgtttgttcaaggagatattccaagcatggcttatactcataacacaaacatgggtgtgcaacaaggaatcaatggtgggatgaacacatcaaaac |
35440751 |
T |
|
| Q |
394 |
ctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgt |
442 |
Q |
| |
|
||| |||| |||||| ||||||| ||||||||||| | ||| |||||| |
|
|
| T |
35440750 |
ctggatattcaagttattctcctcacatgtttggtgctcatggaaatgt |
35440702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 35454565 - 35454520
Alignment:
| Q |
280 |
catttcgtatggttgatatgtctgctcatggagatttttcaagcat |
325 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
35454565 |
catttggtatggttgataagtctgctcatggagatatttcaagcat |
35454520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 35441087 - 35440925
Alignment:
| Q |
42 |
ggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatg |
141 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||| | ||| |||| || || ||||||| | |||||||| | ||||||||| |||||| |
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|
| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
|
| Q |
142 |
agggaacagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtactgatg |
204 |
Q |
| |
|
||||| ||||||| ||||||| || |||||| |||| ||| |||||||||| |||||| |
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|
| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatg |
35440925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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