View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1275R-Insertion-12 (Length: 875)
Name: NF1275R-Insertion-12
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275R-Insertion-12 |
 | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 259 - 784
Target Start/End: Original strand, 336181 - 336707
Alignment:
| Q |
259 |
ctttggtatgaataagacggtagcataggtatagtatatttgacgatgctgtgtaaatggaatagtcgtctatatatagttctatttgggctctttaatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
336181 |
ctttggtatgaataagacggtagcataggtatagtatatttgacgatgctgtgtaaatggaatagtcgtctatatttagttctatttgggctctttaatg |
336280 |
T |
|
| Q |
359 |
cttttttatgatataagctgcagatatttcagtgcgtacttgtttt-ttataagcagaagagtttattcgagagattagtactcaaatgcaaatacaaaa |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336281 |
cttttttatgatataagctgcagatatttcagtgcgtacttgtttttttataagcagaagagtttattcgagagattagtactcaaatgcaaatacaaaa |
336380 |
T |
|
| Q |
458 |
attcaatgtttctgcatgtactacgtagtatttttcaagattcttctatgtcattgatgattatcctcaaagataagtttgaaactttttaattccacat |
557 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336381 |
attcaatttttctgcatgtactacgtagtatttttcaagattcttctgtgtcattgatgattatcctcaaagataagtttgaaactttttaattccacat |
336480 |
T |
|
| Q |
558 |
ttactaattggtgatcacttattttgcttcagatactaacaacgagactaaacgtgaggattggaatcaatcagagaatagaagtccgtcaaaaaatcca |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
336481 |
ttactaattggtgatcacttattttgcttcagatactaacaacgagactaaacgtgaggattggaatcaatcagacaatagaagtccgtcaaaaaatcca |
336580 |
T |
|
| Q |
658 |
aatcagacggtttcattacttccatctaaacttccatctagagctcatttaccttcttgtgctggtacacatgattttgctcaaaatttctgtctagtca |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336581 |
aatcagacggtttcattacttccatctaaacttccatctagagctcatttaccttcttgtgctggtacacatgattttgctcaaaatttctgtctagtca |
336680 |
T |
|
| Q |
758 |
ttcatttgcatctcatgtttttaatgg |
784 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
336681 |
ttcatttgcatctcatgtttttaatgg |
336707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 336052 - 336138
Alignment:
| Q |
130 |
atgttatgagattggctctaggctatagttgcttttgtgaggtaaaaatttggtagcttttttcttctaacgacacaacaaacctac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
336052 |
atgttatgagattggctctaggctatagtttcttttgtgaggtaaaaatttggtaggttttttcttctaacgacacaacaaacctac |
336138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 335931 - 335997
Alignment:
| Q |
9 |
aatagtagatcttattattcctgatcgtgctattaatcaaacttactaaaactttcttgtgttgcta |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
335931 |
aatagtagatcttattattcctgatcgtgctattaatcaaacctacaaaaactttcttgtgttgcta |
335997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 729
Target Start/End: Original strand, 42171893 - 42171934
Alignment:
| Q |
688 |
cttccatctagagctcatttaccttcttgtgctggtacacat |
729 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
42171893 |
cttccagctagagctcatttaccctcttttgctggtacacat |
42171934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University