View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275R-Insertion-13 (Length: 926)

Name: NF1275R-Insertion-13
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275R-Insertion-13
NF1275R-Insertion-13
[»] chr4 (10 HSPs)
chr4 (157-498)||(34824110-34824449)
chr4 (559-891)||(21261019-21261341)
chr4 (559-704)||(35292685-35292835)
chr4 (626-728)||(50859421-50859523)
chr4 (607-704)||(35033173-35033270)
chr4 (609-704)||(13779976-13780071)
chr4 (627-728)||(31229020-31229121)
chr4 (35-106)||(34823955-34824023)
chr4 (607-705)||(41222943-41223041)
chr4 (618-728)||(48085230-48085339)
[»] chr8 (6 HSPs)
chr8 (157-477)||(28946747-28947067)
chr8 (35-106)||(28946592-28946660)
chr8 (632-717)||(38680504-38680589)
chr8 (605-705)||(34924018-34924118)
chr8 (605-712)||(29844963-29845070)
chr8 (617-658)||(11355524-11355565)
[»] chr3 (11 HSPs)
chr3 (149-498)||(42231693-42232025)
chr3 (559-728)||(42028570-42028734)
chr3 (559-704)||(39439206-39439356)
chr3 (9-69)||(42232049-42232109)
chr3 (605-704)||(32279090-32279189)
chr3 (550-704)||(25046104-25046263)
chr3 (656-712)||(24373430-24373486)
chr3 (609-699)||(44714059-44714149)
chr3 (628-693)||(23420500-23420565)
chr3 (628-682)||(2275577-2275631)
chr3 (612-658)||(14568546-14568592)
[»] chr2 (6 HSPs)
chr2 (607-728)||(28219704-28219825)
chr2 (558-701)||(10354894-10355042)
chr2 (621-704)||(17998987-17999070)
chr2 (629-728)||(23701656-23701755)
chr2 (607-704)||(28198514-28198611)
chr2 (640-707)||(44247062-44247129)
[»] chr5 (8 HSPs)
chr5 (559-728)||(4944450-4944613)
chr5 (551-704)||(11617875-11618033)
chr5 (612-704)||(21521480-21521572)
chr5 (612-704)||(21532046-21532138)
chr5 (616-704)||(30085632-30085720)
chr5 (607-704)||(15024025-15024122)
chr5 (605-726)||(7505285-7505406)
chr5 (617-658)||(32233763-32233804)
[»] chr1 (15 HSPs)
chr1 (612-727)||(8099696-8099811)
chr1 (622-702)||(8102100-8102180)
chr1 (632-704)||(34970846-34970918)
chr1 (612-704)||(48047032-48047124)
chr1 (626-704)||(49765596-49765674)
chr1 (607-712)||(15582289-15582394)
chr1 (611-693)||(8103588-8103670)
chr1 (808-878)||(8103869-8103938)
chr1 (808-878)||(8102371-8102440)
chr1 (615-702)||(41404868-41404955)
chr1 (554-714)||(50677402-50677557)
chr1 (631-702)||(41419127-41419198)
chr1 (607-705)||(32573737-32573835)
chr1 (617-658)||(42116481-42116522)
chr1 (617-658)||(49742069-49742110)
[»] scaffold0022 (2 HSPs)
scaffold0022 (640-704)||(43496-43560)
scaffold0022 (640-704)||(77216-77280)
[»] chr7 (5 HSPs)
chr7 (607-700)||(36656799-36656892)
chr7 (608-704)||(19626147-19626243)
chr7 (607-705)||(19848467-19848565)
chr7 (607-702)||(3215179-3215274)
chr7 (559-704)||(12634103-12634247)
[»] scaffold0039 (1 HSPs)
scaffold0039 (605-705)||(57668-57768)
[»] scaffold0110 (1 HSPs)
scaffold0110 (612-714)||(37864-37966)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 157 - 498
Target Start/End: Original strand, 34824110 - 34824449
Alignment:
Q  157 ggatggaagtgacttcaccgatcttaatggtggaagcatcggtgagatgaaaaggggtatttggaggaacgggtatgttgtctaaaacggtaccgtttga 256  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||  |||||| |||||||| ||||| ||    
T  34824110 ggatggaagtaacttcaccgatcttaatggtggaaccatcgctgagatgaaaaggagtatttggaggaacaggttcgttgtccaaaacggtgccgttaga 34824209  T
Q  257 ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824210 ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg 34824309  T
Q  357 attacccgaccgattttgatggtggatccgggttcaaattggtgggtttcgccgttgcgtggaccggcgaggatttgaagtgtgagagatggagcctctt 456  Q
    || || ||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||  || |  ||||    
T  34824310 atgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcgtggaccggcgaggatttggagtgtaagagtgggtgagtctt 34824409  T
Q  457 gttgttcttccattttagtgatagtgagagagtgagtttgga 498  Q
    ||||||||||||||||||||  || ||| |||||||||||||    
T  34824410 gttgttcttccattttagtg--agagagtgagtgagtttgga 34824449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 559 - 891
Target Start/End: Original strand, 21261019 - 21261341
Alignment:
Q  559 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    ||||||||||| |||||||||| | |||||| | ||||| |||     || ||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  21261019 tgtttggataacctaaaactaacgaagcggagcggaatggagc-----gggatggaatggaatggagtggaacaaagattccattccattgttttgatat 21261113  T
Q  659 tatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacnnnnnnnatttcttatttatcctttactta 758  Q
    |||| |||||||||| |||||||| | |||||||||||||||||||  | |||||| |||||||||||||       ||| |||||||| ||||||||||    
T  21261114 tatatgacggaatgagactaattttctactccattgtttggaaagtgaacggaatggaattagttataactttttt-attccttatttaccctttactta 21261212  T
Q  759 gaaaacttcacaagaataaacataagcagcttaaattttgggttctgcataatttgcaactagtgtatttttcctttggcaaattaaaccaaacaataat 858  Q
    |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  21261213 gaaaacttcacaagaataaacataagcaacataaatttt-ggttctgcataatttgcaactagtgta-ttttcctttggcagattaaaccaaacaataat 21261310  T
Q  859 aatataggaaggattatatagggttacacgtaa 891  Q
    |||||  |||| |||||||| ||||||||||||    
T  21261311 aatat-cgaagaattatata-ggttacacgtaa 21261341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 559 - 704
Target Start/End: Complemental strand, 35292835 - 35292685
Alignment:
Q  559 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattccattgtttg 653  Q
    |||||||||||||||||||||| |||||||||| ||||| ||  | |||| | || | ||||||||      ||||| |||||||||||| |||||||||    
T  35292835 tgtttggataatctaaaactaacggagcggaacggaatggagtggaatgggacgggacggaatggaacggcatggaataaaaatttcattacattgtttg 35292736  T
Q  654 gatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||||  | ||||||||| |||||||||||||||||||||||||||||||    
T  35292735 gatatttcaagacggaatggaactaatttcccactccattgtttggaaagt 35292685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 626 - 728
Target Start/End: Complemental strand, 50859523 - 50859421
Alignment:
Q  626 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttat 725  Q
    ||||| ||| ||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||| |||||||||| || |||||| ||| ||||||    
T  50859523 tggaataaagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttat 50859424  T
Q  726 aac 728  Q
    |||    
T  50859423 aac 50859421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 607 - 704
Target Start/End: Original strand, 35033173 - 35033270
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||||| |||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||    
T  35033173 ggaatgggatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagt 35033270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 609 - 704
Target Start/End: Complemental strand, 13780071 - 13779976
Alignment:
Q  609 aatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||||||||||| ||| |||| |||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||    
T  13780071 aatggaatggaatcgagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagt 13779976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 627 - 728
Target Start/End: Complemental strand, 31229121 - 31229020
Alignment:
Q  627 ggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttata 726  Q
    |||| ||| ||||||||||| |||||||||||| || ||  ||||||||| |||||| || |||||||||||||||||||| |||| | ||| |||||||    
T  31229121 ggaataaatatttcattccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttggaaagttgacggaacggaatgagttata 31229022  T
Q  727 ac 728  Q
    ||    
T  31229021 ac 31229020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 34823955 - 34824023
Alignment:
Q  35 ttcatcatcaccattcaacattccatcttcatgaatactactctgaaccggaaccctaaatttaacagtttt 106  Q
    |||||||||||||||||||||||||||||||| ||   ||||||| ||||||||||||||||||||| ||||    
T  34823955 ttcatcatcaccattcaacattccatcttcatcaa---tactctgtaccggaaccctaaatttaacactttt 34824023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 705
Target Start/End: Original strand, 41222943 - 41223041
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagtt 705  Q
    ||||||||| |||| ||| ||||| ||| ||| |||||||||||||||||| | || || |||| | ||||| ||| ||| ||||||||||||||||||    
T  41222943 ggaatggaacggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagtt 41223041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 728
Target Start/End: Complemental strand, 48085339 - 48085230
Alignment:
Q  618 gaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaa 717  Q
    |||||||  |||| ||||||| |||||||||||||||||||| ||||| |||||||| ||||||| ||| ||| ||||||| ||| | || |||| | ||    
T  48085339 gaatggaacggaataaaaattacattccattgtttggatatt-tacgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaacggaa 48085241  T
Q  718 ttagttataac 728  Q
    ||| |||||||    
T  48085240 ttaattataac 48085230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 157 - 477
Target Start/End: Original strand, 28946747 - 28947067
Alignment:
Q  157 ggatggaagtgacttcaccgatcttaatggtggaagcatcggtgagatgaaaaggggtatttggaggaacgggtatgttgtctaaaacggtaccgtttga 256  Q
    |||||||||| |||||||||||||||||||||||| |||||  |||||||||||| ||||| |||||||| |||  |||||| |||||||| ||||| ||    
T  28946747 ggatggaagtaacttcaccgatcttaatggtggaaccatcgcagagatgaaaaggagtattcggaggaacaggttcgttgtccaaaacggtgccgttaga 28946846  T
Q  257 ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28946847 ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg 28946946  T
Q  357 attacccgaccgattttgatggtggatccgggttcaaattggtgggtttcgccgttgcgtggaccggcgaggatttgaagtgtgagagatggagcctctt 456  Q
    || || ||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||  || |  ||||    
T  28946947 atgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcgtggaccggcgaggatttggagtgtgagagtgggtgggtctt 28947046  T
Q  457 gttgttcttccattttagtga 477  Q
    |||||||||||||||||||||    
T  28947047 gttgttcttccattttagtga 28947067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 28946592 - 28946660
Alignment:
Q  35 ttcatcatcaccattcaacattccatcttcatgaatactactctgaaccggaaccctaaatttaacagtttt 106  Q
    |||||||||||||||||||||||||||||||| ||   ||||||| ||||||||||||||||||||| ||||    
T  28946592 ttcatcatcaccattcaacattccatcttcatcaa---tactctgtaccggaaccctaaatttaacactttt 28946660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 632 - 717
Target Start/End: Complemental strand, 38680589 - 38680504
Alignment:
Q  632 aaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaa 717  Q
    ||||| |||||| ||||||||||||||| ||||| |||||  ||||||||||||||||||||| ||||||||| || |||| ||||    
T  38680589 aaaaaattcatttcattgtttggatattttacgatggaattgaactaatttcccactccattgcttggaaagtggacggaacgaaa 38680504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 605 - 705
Target Start/End: Original strand, 34924018 - 34924118
Alignment:
Q  605 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||||||||  |||| || ||||| ||| |||||||||||||||||||||| | || || |||| ||||||| ||| ||| |||||||||||||||||    
T  34924018 atggaatggaacagaattgaatggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttggaaagt 34924117  T
Q  705 t 705  Q
    |    
T  34924118 t 34924118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 605 - 712
Target Start/End: Complemental strand, 29845070 - 29844963
Alignment:
Q  605 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||| |||| ||||||||  |||| ||| || |||||||| ||||||||||||  | ||||||||| ||||||||||||| |||||||||||  ||||    
T  29845070 atggaacggaacggaatggaacggaataaagatatcattccactgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagt 29844971  T
Q  705 tgatggaa 712  Q
     |||||||    
T  29844970 cgatggaa 29844963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 658
Target Start/End: Complemental strand, 11355565 - 11355524
Alignment:
Q  617 ggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  11355565 ggaatggaatggaacaaagattccattccattgtttggatat 11355524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 149 - 498
Target Start/End: Complemental strand, 42232025 - 42231693
Alignment:
Q  149 attgactcggatggaagtgacttcaccgatcttaatggtggaagcatcggtgagatgaaaaggggtatttggaggaacgggtatgttgtctaaaacggta 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||     
T  42232025 attgactcggatggaagtgacttcaccgatcttaatggtggaagcataggtgagatgaaaaggggtatttggaggaacgggtttgttatctaaaacggtg 42231926  T
Q  249 ccgtttgaggaatcgagatctgtgagaatccaattaccg---gaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggt 345  Q
    ||||||||||||||||||| ||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42231925 ccgtttgaggaatcgagatatgtgagaatccaattacaggacgaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggt 42231826  T
Q  346 tgttgccgcggattacccgaccgattttgatggtggatccgggttcaaattggtgggtttcgccgttgcgtggaccggcgaggatttgaagtgtgagaga 445  Q
    |||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||          |||||||||| ||||||||||      
T  42231825 tgttgccgcgtatgacccgaccgattttgatggtggatccaggttcgaattggtgggtttcgccgtt----------gcgaggatttcaagtgtgaga-- 42231738  T
Q  446 tggagcctcttgttgttcttccattttagtgatagtgagagagtgagtttgga 498  Q
            |||||||||||||||||||| ||||||||||||||||||||||||    
T  42231737 --------cttgttgttcttccattttactgatagtgagagagtgagtttgga 42231693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 559 - 728
Target Start/End: Original strand, 42028570 - 42028734
Alignment:
Q  559 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    ||||||||||| |||||||||| |||||||||| ||||| |||     |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42028570 tgtttggataacctaaaactaacggagcggaaccgaatggagc-----ggaatggaatggaatggagtggaacaaagatttcattccattgtttggatat 42028664  T
Q  659 tatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataac 728  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  42028665 tatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataac 42028734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 559 - 704
Target Start/End: Original strand, 39439206 - 39439356
Alignment:
Q  559 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattccattgtttg 653  Q
    |||||||||||||||||||||| |||||||||  ||||| ||| | |||| | || || |||||||      ||||| ||||||||||||||||||||||    
T  39439206 tgtttggataatctaaaactaacggagcggaatggaatggagcggaatgggacgggatagaatggaacgacatggaataaaaatttcattccattgtttg 39439305  T
Q  654 gatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||||  | ||||||||||||||||||||||||||||||||||| |||||    
T  39439306 gatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagt 39439356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 42232109 - 42232049
Alignment:
Q  9 tgaggtcgatctacaattacaccagattcatcatcaccattcaacattccatcttcatgaa 69  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  42232109 tgaggtcgatctacaattccaccagattcataatcaccattcaacattccatcttcatgaa 42232049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 605 - 704
Target Start/End: Complemental strand, 32279189 - 32279090
Alignment:
Q  605 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||||||||||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||  ||||||||| |||||||||||||||||||||    
T  32279189 atggaatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagt 32279090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 550 - 704
Target Start/End: Complemental strand, 25046263 - 25046104
Alignment:
Q  550 ttaagactttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaa-----tggaatggaatggagtggaacaaaaatttcattc 644  Q
    ||||| || |||||||||||  | ||||||| |||||||||||||||| ||| |  |||||     |||||||||| |||| ||||||||  || ||| |    
T  25046263 ttaaggctctgtttggataacatgaaactaacggagcggaacagaatggagcggagtggaactgaatggaatggaacggagcggaacaaaggttccatcc 25046164  T
Q  645 cattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
     |||||||||||||| ||| |||||||  ||||||||| |||||||||||||| ||||||    
T  25046163 tattgtttggatattttactacggaattgaactaattttccactccattgtttagaaagt 25046104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 656 - 712
Target Start/End: Original strand, 24373430 - 24373486
Alignment:
Q  656 tattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaa 712  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaa 24373486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 699
Target Start/End: Complemental strand, 44714149 - 44714059
Alignment:
Q  609 aatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgg 699  Q
    |||||||||||  ||| ||||| ||| ||||||||| |||||||||||||| ||||| |||||| |||||||||  || || |||||||||    
T  44714149 aatggaatggagcggaatggaataaagatttcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttgg 44714059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 628 - 693
Target Start/End: Complemental strand, 23420565 - 23420500
Alignment:
Q  628 gaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccatt 693  Q
    ||||||| |||| ||||||||||||||||||| || || |||||||||||||||| ||| ||||||    
T  23420565 gaacaaatattttattccattgtttggatattttatgatggaatgaaactaattttccattccatt 23420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 628 - 682
Target Start/End: Complemental strand, 2275631 - 2275577
Alignment:
Q  628 gaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaattt 682  Q
    ||||||| |||||||||||||||||||||| | || || ||||||||| ||||||    
T  2275631 gaacaaacatttcattccattgtttggatactctaagatggaatgaaattaattt 2275577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 658
Target Start/End: Complemental strand, 14568592 - 14568546
Alignment:
Q  612 ggaatggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    ||||||||||||| ||||||||| |||  ||||||||||||||||||    
T  14568592 ggaatggaatggaatggaacaaagattcaattccattgtttggatat 14568546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 4e-50; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 607 - 728
Target Start/End: Complemental strand, 28219825 - 28219704
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 706  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |    
T  28219825 ggaatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtgg 28219726  T
Q  707 atggaatgaaattagttataac 728  Q
    | ||||||||||||||||||||    
T  28219725 acggaatgaaattagttataac 28219704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 558 - 701
Target Start/End: Complemental strand, 10355042 - 10354894
Alignment:
Q  558 ttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattccattgttt 652  Q
    ||||||||||||||||||||||| ||| |||||| ||||| ||  | |||  |||| | ||||||||      ||||| |||||||||||||||||||||    
T  10355042 ttgtttggataatctaaaactaacggatcggaacggaatggagtggaatgagatgggacggaatggaacgtcatggaataaaaatttcattccattgttt 10354943  T
Q  653 ggatattatacgacggaatgaaactaatttcccactccattgtttggaa 701  Q
    |||||||  | ||||||||| ||||||||||||||||||||||||||||    
T  10354942 ggatatttcaagacggaatggaactaatttcccactccattgtttggaa 10354894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 621 - 704
Target Start/End: Original strand, 17998987 - 17999070
Alignment:
Q  621 tggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||| ||||| ||||||| ||||| |||||||||||||| || ||||||||| ||||||||||||| ||||||||||| |||||    
T  17998987 tggaatggaataaaaattacattctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagt 17999070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 629 - 728
Target Start/End: Complemental strand, 23701755 - 23701656
Alignment:
Q  629 aacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataac 728  Q
    |||||| |||||||||||||| || |||||| || ||| |||| | |||||||| ||| |||||||||||||||||||||| |||| ||| |||||||||    
T  23701755 aacaaagatttcattccattgcttagatattttatgacagaataagactaattttccattccattgtttggaaagttgatgaaatggaatgagttataac 23701656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 607 - 704
Target Start/End: Original strand, 28198514 - 28198611
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||||||||||| |||| ||||||||  || ||  | |||||||||||||| ||| |||||||| ||||||||| ||||| |||||||||||||||    
T  28198514 ggaatggaatggaacggagcggaacaaaggttccaccctattgtttggatattttactacggaatggaactaattttccacttcattgtttggaaagt 28198611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 640 - 707
Target Start/End: Complemental strand, 44247129 - 44247062
Alignment:
Q  640 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttga 707  Q
    |||||||| |||||||||||  |||| |||| |||||||| || |||||||||||||||| |||||||    
T  44247129 cattccatcgtttggatatttcacgatggaacgaaactaactttccactccattgtttgggaagttga 44247062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 559 - 728
Target Start/End: Complemental strand, 4944613 - 4944450
Alignment:
Q  559 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    ||||||||||| |||||||||| |||||||||| ||||||    ||  |||||| ||||||| ||||||||||||| ||| |||||||||||||||||||    
T  4944613 tgtttggataacctaaaactaacggagcggaacggaatga----gc--ggaatgaaatggaacggagtggaacaaagattccattccattgtttggatat 4944520  T
Q  659 tatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataac 728  Q
    ||||||||| |||| ||||||||||  ||||||||||||||||||| || |||||| |||||| ||||||    
T  4944519 tatacgacgaaatggaactaatttcatactccattgtttggaaagtggacggaatggaattagatataac 4944450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 551 - 704
Target Start/End: Complemental strand, 11618033 - 11617875
Alignment:
Q  551 taagactttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattcc 645  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||| ||| | |||| | || |  |||||||      ||||| ||||||| ||||||    
T  11618033 taaggctttgtttggataatctaaaactaacggagcgaaacagaatggagcggaatgggacgggactgaatggaacgtcatggaataaaaattccattcc 11617934  T
Q  646 attgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||||| |||||  | |||||||||||||||||||||||||||||||||||||||||    
T  11617933 attgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagt 11617875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 612 - 704
Target Start/End: Complemental strand, 21521572 - 21521480
Alignment:
Q  612 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||| |||||| ||| |||| |  | ||||||||||| |||||    
T  21521572 ggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagt 21521480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 612 - 704
Target Start/End: Complemental strand, 21532138 - 21532046
Alignment:
Q  612 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||| |||||| ||| |||| |  | ||||||||||| |||||    
T  21532138 ggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagt 21532046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 616 - 704
Target Start/End: Complemental strand, 30085720 - 30085632
Alignment:
Q  616 tggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||  ||||||||| |||||||||||||||||||||    
T  30085720 tggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagt 30085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 704
Target Start/End: Complemental strand, 15024122 - 15024025
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||||||||||  ||| ||||||||||| | ||||| ||||||| | |||| |||||||||||| ||| || ||  || |||||||||| ||||||    
T  15024122 ggaatggaatggagcggaatggaacaaaaactgcattctattgtttaggtattgtacgacggaatggaacaaacttttcattccattgtttagaaagt 15024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 726
Target Start/End: Original strand, 7505285 - 7505406
Alignment:
Q  605 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||| ||| |||||||||   ||| |||||||  |||||||| ||| |||| | || || |||||| | ||||||| ||| ||||||||||| |||||    
T  7505285 atggaacggagtggaatggaacagaataaaaattatattccattatttagatactttatgatggaatggagctaattttccattccattgtttgaaaagt 7505384  T
Q  705 tgatggaatgaaattagttata 726  Q
    ||| |||| | ||| |||||||    
T  7505385 tgacggaacggaatgagttata 7505406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 658
Target Start/End: Complemental strand, 32233804 - 32233763
Alignment:
Q  617 ggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  32233804 ggaatggaatggaacaaagattccattccattgtttggatat 32233763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 7e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 612 - 727
Target Start/End: Complemental strand, 8099811 - 8099696
Alignment:
Q  612 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 711  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| | || |||    
T  8099811 ggaacggaacggagtggaacaaagatttcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgtttagaaaatagacgga 8099712  T
Q  712 atgaaattagttataa 727  Q
    |  |||| ||||||||    
T  8099711 acaaaatgagttataa 8099696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 622 - 702
Target Start/End: Original strand, 8102100 - 8102180
Alignment:
Q  622 ggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 702  Q
    ||||||||||||| |||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  8102100 ggagtggaacaaagatttcattccattgtttgaatattaaacgatggaataaaactaatttcccactccattgtttagaaa 8102180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 632 - 704
Target Start/End: Complemental strand, 34970918 - 34970846
Alignment:
Q  632 aaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  34970918 aaaaatgtcattccattgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagt 34970846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 612 - 704
Target Start/End: Complemental strand, 48047124 - 48047032
Alignment:
Q  612 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||||||| ||  ||||| |||||||||||||||||||||||| ||| || ||| ||||| |||||||||||||||||||||||||||||||    
T  48047124 ggaatggaacggtatggaataaaaatttcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagt 48047032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 49765674 - 49765596
Alignment:
Q  626 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||    
T  49765674 tggaaaaaaaaattcattccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagt 49765596  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 607 - 712
Target Start/End: Complemental strand, 15582394 - 15582289
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 706  Q
    |||| |||||||||||||  |||| ||||||| |||||||||||||||||| | || || |||||| ||||||||| ||| |||||||||||||||||||    
T  15582394 ggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgtttggaaagttg 15582295  T
Q  707 atggaa 712  Q
    | ||||    
T  15582294 acggaa 15582289  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 611 - 693
Target Start/End: Original strand, 8103588 - 8103670
Alignment:
Q  611 tggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccatt 693  Q
    ||||||| || ||||||||||||| |||  ||| |||||||||||||||| || ||||||| |||||||||||||||||||||    
T  8103588 tggaatgaaacggagtggaacaaagattctatttcattgtttggatattaaacaacggaataaaactaatttcccactccatt 8103670  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 808 - 878
Target Start/End: Original strand, 8103869 - 8103938
Alignment:
Q  808 taatttgcaactagtgtatttttcctttggcaaattaaaccaaacaataataatataggaaggattatata 878  Q
    |||||||||||||||||||||| ||||| |||  ||||||||||||||||||||||| |||||||||||||    
T  8103869 taatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatata-gaaggattatata 8103938  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 808 - 878
Target Start/End: Original strand, 8102371 - 8102440
Alignment:
Q  808 taatttgcaactagtgtatttttcctttggcaaattaaaccaaacaataataatataggaaggattatata 878  Q
    |||||||||||||||||||||| ||||| |||  ||||||||||| ||||||||||| |||||||||||||    
T  8102371 taatttgcaactagtgtattttcccttttgcagcttaaaccaaacgataataatata-gaaggattatata 8102440  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 615 - 702
Target Start/End: Complemental strand, 41404955 - 41404868
Alignment:
Q  615 atggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 702  Q
    ||||||||||  |||| ||| ||| ||||||| |||||||||| | |||||||||||  |  |||||||||| |||||||||||||||    
T  41404955 atggaatggaacggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattccattgtttggaaa 41404868  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 714
Target Start/End: Original strand, 50677402 - 50677557
Alignment:
Q  554 gactttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttg 653  Q
    |||| |||||||||||  ||||||||| ||||||||| |||||| |     |||||   ||||| |||| | ||||| | | ||| |||||||| |||||    
T  50677402 gactctgtttggataacttaaaactaacggagcggaaaagaatgga-----atggagcagaatgaaatgaaatggaatagagattacattccatcgtttg 50677496  T
Q  654 gatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatg 714  Q
    |||||| ||||| |||| | |||||| || |||||| ||||||||  ||||||| ||||||    
T  50677497 gatattttacgatggaacggaactaactttccactctattgtttgagaagttgacggaatg 50677557  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 702
Target Start/End: Complemental strand, 41419198 - 41419127
Alignment:
Q  631 caaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 702  Q
    |||| |||| ||| |||||||| |||||| |||||| |||||||||||||||| || | |||| ||||||||    
T  41419198 caaagattttatttcattgttttgatattttacgacagaatgaaactaatttctcattacattctttggaaa 41419127  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 607 - 705
Target Start/End: Complemental strand, 32573835 - 32573737
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagtt 705  Q
    |||| |||| |||||||| ||||| ||| ||| |||||||||||||||||| | || || ||||   ||||| ||| ||| ||||||||||| ||||||    
T  32573835 ggaacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagtt 32573737  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 658
Target Start/End: Original strand, 42116481 - 42116522
Alignment:
Q  617 ggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  42116481 ggaatggaatggaacaaagattccattccattgtttggatat 42116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 658
Target Start/End: Complemental strand, 49742110 - 49742069
Alignment:
Q  617 ggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  49742110 ggaatggaatggaacaaagattccattccattgtttggatat 49742069  T

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Target: scaffold0022 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 640 - 704
Target Start/End: Original strand, 43496 - 43560
Alignment:
Q  640 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  43496 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagt 43560  T

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Target: scaffold0022; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 640 - 704
Target Start/End: Original strand, 77216 - 77280
Alignment:
Q  640 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  77216 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagt 77280  T

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Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 607 - 700
Target Start/End: Original strand, 36656799 - 36656892
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgga 700  Q
    |||||| || |||||||| ||||||||||||| |||||||||| ||||||||| || ||||||||| |||||| || || ||||||||||||||    
T  36656799 ggaatgtaacggaatggaatggaacaaaaattacattccattgcttggatattttatgacggaatggaactaactttccgctccattgtttgga 36656892  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 608 - 704
Target Start/End: Complemental strand, 19626243 - 19626147
Alignment:
Q  608 gaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||||||||||| | || |||| |||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||| ||||||||||||||    
T  19626243 gaatggaatggaacgtagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccactcaattgtttggaaagt 19626147  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 705
Target Start/End: Complemental strand, 19848565 - 19848467
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagtt 705  Q
    |||| |||| |||||||| ||||| ||| ||| |||||||||||||||||| | || || |||| | ||||| ||| ||| ||||||||||||||||||    
T  19848565 ggaacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagtt 19848467  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 607 - 702
Target Start/End: Original strand, 3215179 - 3215274
Alignment:
Q  607 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 702  Q
    ||||||||  |||| ||| ||||| |||||| |||||||||||| |||||||| |  ||||||||| |||||| ||| ||||||||| ||| ||||    
T  3215179 ggaatggagcggaacggaatggaataaaaatgtcattccattgtgtggatattttctgacggaatggaactaacttctcactccattatttagaaa 3215274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 704
Target Start/End: Complemental strand, 12634247 - 12634103
Alignment:
Q  559 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 658  Q
    |||||||||||  ||||||||| ||||||||| |||| |||  |  || ||| | ||||||| |||| |||| ||| ||| || |||| |||||||||||    
T  12634247 tgtttggataacttaaaactaacggagcggaatagaaagaatgaa-attgaacgaaatggaacggagcggaaaaaatattccactccactgtttggatat 12634149  T
Q  659 tatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    | || |||| |||| ||  |||||| || |||||||||||||||||    
T  12634148 tttatgacgaaatggaataaatttcacattccattgtttggaaagt 12634103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 605 - 705
Target Start/End: Complemental strand, 57768 - 57668
Alignment:
Q  605 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 704  Q
    ||||||||||| ||||| || ||||| ||| |||||||||||||||||||||| | || || |||| | ||||| ||| ||| |||||||||||||||||    
T  57768 atggaatggaacggaattgaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagt 57669  T
Q  705 t 705  Q
    |    
T  57668 t 57668  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 714
Target Start/End: Original strand, 37864 - 37966
Alignment:
Q  612 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 711  Q
    |||||||||| || ||||| | | ||| |||||||| |||||||||||  |||| |||| | |  ||| || |||||||||||||||||||| ||| |||    
T  37864 ggaatggaatagattggaatagagattacattccatcgtttggatatttcacgatggaacggagttaactttccactccattgtttggaaagatgacgga 37963  T
Q  712 atg 714  Q
    |||    
T  37964 atg 37966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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