View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275R-Insertion-14 (Length: 960)

Name: NF1275R-Insertion-14
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275R-Insertion-14
NF1275R-Insertion-14
[»] chr5 (10 HSPs)
chr5 (292-741)||(9637580-9638039)
chr5 (9-233)||(9637290-9637521)
chr5 (818-892)||(9638056-9638130)
chr5 (575-652)||(40955848-40955925)
chr5 (574-628)||(2033122-2033176)
chr5 (508-556)||(12640265-12640313)
chr5 (451-522)||(8285232-8285306)
chr5 (492-556)||(8840058-8840122)
chr5 (580-654)||(8099847-8099921)
chr5 (508-557)||(1862422-1862471)
[»] chr1 (13 HSPs)
chr1 (575-651)||(49176971-49177047)
chr1 (580-655)||(15444465-15444540)
chr1 (329-391)||(1818400-1818462)
chr1 (492-558)||(1818421-1818487)
chr1 (492-555)||(6061590-6061653)
chr1 (591-628)||(3158026-3158063)
chr1 (451-555)||(40649755-40649862)
chr1 (580-628)||(31092278-31092326)
chr1 (449-556)||(38783869-38783979)
chr1 (329-392)||(15395193-15395256)
chr1 (593-655)||(11642237-11642299)
chr1 (586-680)||(44122280-44122374)
chr1 (508-545)||(40650064-40650101)
[»] chr7 (13 HSPs)
chr7 (580-653)||(14063382-14063455)
chr7 (580-653)||(14373410-14373483)
chr7 (451-556)||(42709894-42710002)
chr7 (581-628)||(31327500-31327547)
chr7 (450-556)||(41008915-41009024)
chr7 (581-629)||(27170775-27170823)
chr7 (580-652)||(29121569-29121641)
chr7 (580-626)||(15464744-15464790)
chr7 (595-636)||(2850888-2850929)
chr7 (584-629)||(4088186-4088231)
chr7 (591-628)||(4926040-4926077)
chr7 (595-636)||(13962040-13962081)
chr7 (580-629)||(27215621-27215670)
[»] chr2 (7 HSPs)
chr2 (574-655)||(34437980-34438061)
chr2 (449-556)||(22191505-22191616)
chr2 (575-680)||(38763602-38763707)
chr2 (595-631)||(27866565-27866601)
chr2 (590-668)||(30832083-30832161)
chr2 (582-628)||(33406980-33407026)
chr2 (508-557)||(32502788-32502837)
[»] chr8 (10 HSPs)
chr8 (575-654)||(8979152-8979231)
chr8 (594-666)||(44225661-44225733)
chr8 (580-631)||(5878995-5879046)
chr8 (580-655)||(6323317-6323391)
chr8 (593-655)||(12899781-12899843)
chr8 (584-629)||(135675-135720)
chr8 (580-629)||(136835-136884)
chr8 (580-656)||(3117001-3117075)
chr8 (593-628)||(41687403-41687438)
chr8 (582-623)||(35894937-35894978)
[»] chr6 (9 HSPs)
chr6 (580-666)||(12340019-12340104)
chr6 (580-654)||(26592381-26592455)
chr6 (451-557)||(8446919-8447028)
chr6 (451-557)||(8455723-8455832)
chr6 (580-654)||(17398876-17398949)
chr6 (580-642)||(21018818-21018880)
chr6 (583-628)||(2423680-2423725)
chr6 (440-493)||(26330228-26330281)
chr6 (580-625)||(31490603-31490648)
[»] chr4 (5 HSPs)
chr4 (574-668)||(11024864-11024958)
chr4 (584-666)||(36217358-36217440)
chr4 (502-556)||(13302114-13302168)
chr4 (580-636)||(23915436-23915492)
chr4 (591-653)||(17121312-17121374)
[»] chr3 (11 HSPs)
chr3 (451-556)||(39840886-39840994)
chr3 (581-654)||(27151553-27151626)
chr3 (492-556)||(39840636-39840700)
chr3 (580-679)||(10973595-10973694)
chr3 (451-548)||(55446931-55447031)
chr3 (492-533)||(42045771-42045812)
chr3 (492-556)||(48338590-48338654)
chr3 (580-631)||(53560276-53560327)
chr3 (583-628)||(3442113-3442158)
chr3 (493-562)||(28860461-28860530)
chr3 (607-668)||(41287763-41287824)
[»] scaffold0021 (1 HSPs)
scaffold0021 (580-678)||(126230-126328)
[»] scaffold0302 (1 HSPs)
scaffold0302 (595-641)||(16172-16218)
[»] scaffold0198 (1 HSPs)
scaffold0198 (508-553)||(11930-11975)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 292 - 741
Target Start/End: Original strand, 9637580 - 9638039
Alignment:
Q  292 aagataaaaatcatattttaattattaaattgattcatgttttcgtaagggattctcaaattaatgtatg----attctattaatatttttaaatagttt 387  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||    |||||||||||||||| ||||||| |    
T  9637580 aagataaaaaccatattttaattattaaattgattgatgtcttcgtaagtgattctcaaattaatgtatgcatgattctattaatattttaaaatagtct 9637679  T
Q  388 ctgtc------ataaatttttcaattaagtccctcatcatttgaagnnnnnnncacataaacattggtctaattgagaagctttttacaaagatattgac 481  Q
    |||||      ||||||||||||||||| |||| ||||||||||||       |||| ||||||||||||||||||||| ||||| ||||||| ||||||    
T  9637680 ctgtctttgtcataaatttttcaattaaatcccacatcatttgaaggaaaaaacacagaaacattggtctaattgagaaacttttgacaaagacattgac 9637779  T
Q  482 cattttaaaataatagagttagggattaatttgagaatcacttacaaagacacggatcaaattgatggtttactcggtttttatttatagggatattcta 581  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  9637780 cattttaaaataatagagttagggactaatttgagaatcacttacaaagacacggaccaaattgatggtttactcggtttttatttatagggatatttta 9637879  T
Q  582 gtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatataagatggagggaa 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  9637880 gtaaatgacacatattttatcattaaaatcaacattattaatcatttccttaatactcgtataaaactcaaatgagacatctaatataagatggagggaa 9637979  T
Q  682 tatatttaagaacggatggagtaatttaatgtacaacttttgagacaatttctacaataa 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9637980 tatatttaagaacggatggagtaatttaatgtacaacttttgagacaatttctacaataa 9638039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 9637290 - 9637521
Alignment:
Q  9 gttcaaaagcaataatttcttgttttcaaaacacactcatggc-----taaaattgctctattccccatctcatctcataagtgatttattttgaccata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9637290 gttcaaaagcaataatttcttgttttcaaaacacactcatggactggttaaaattgctctattccccatctcatctcataagtgatttattttgaccata 9637389  T
Q  104 tagaggatttcgggtggcaaggggatctagctcccaccccaccaccccacatgttatactcatgctaatctattttaaggatacaagtc--agaatataa 201  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| |    
T  9637390 tagaggatttcgggtggtaaggggatctagctcccaccccaccaccccacatgttatactcatgctaatctatgttaaggatacaagtcagagaatatta 9637489  T
Q  202 aaatggtgagttttatattaaaaacaagtttg 233  Q
    ||||||||| ||||||||||||||||||||||    
T  9637490 aaatggtgaattttatattaaaaacaagtttg 9637521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 818 - 892
Target Start/End: Original strand, 9638056 - 9638130
Alignment:
Q  818 tattagagcacatgttagcatttttctttatgc-gagcattatagtatactttatgagcttataattatatttttt 892  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  9638056 tattagagcacatgttagcatttt-ctttatgcagagcattatagtatactttatgagcttataattataattttt 9638130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 575 - 652
Target Start/End: Original strand, 40955848 - 40955925
Alignment:
Q  575 tattctagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaa 652  Q
    |||| |||||||||| | || |||||||||||||||||||||||||||||||||  | |||| |||||||||||||||    
T  40955848 tattttagtaaatgatatattttttatcattaaaatcaacattattaatcatttatttaataatcgtataaaactcaa 40955925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 628
Target Start/End: Original strand, 2033122 - 2033176
Alignment:
Q  574 atattctagtaaatgacacatattttatcattaaaatcaacattattaatcattt 628  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  2033122 atattttagtaaatgaaacatattttatcattaaaatcaatattactaatcattt 2033176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 556
Target Start/End: Original strand, 12640265 - 12640313
Alignment:
Q  508 taatttgagaatcacttacaaagacacggatcaaattgatggtttactc 556  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  12640265 taatttgagaatcacttacaaagacagggaccaatttgatggtttactc 12640313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 451 - 522
Target Start/End: Original strand, 8285232 - 8285306
Alignment:
Q  451 taattgagaagctttttacaaagatattgaccattttaaaa---taatagagttagggattaatttgagaatcac 522  Q
    |||||||||| ||||| |||||||||| ||| |||||||||   ||||| ||| ||||| |||||||||||||||    
T  8285232 taattgagaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgagaatcac 8285306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 8840058 - 8840122
Alignment:
Q  492 taatagagttagggattaatttgagaatcacttacaaagacacggatcaaattgatggtttactc 556  Q
    |||||||||  |||| |||| |||||||| |||||||| ||| ||| ||||||||||||||||||    
T  8840058 taatagagtcggggactaatctgagaatcccttacaaatacagggaccaaattgatggtttactc 8840122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 654
Target Start/End: Complemental strand, 8099921 - 8099847
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaat 654  Q
    ||||||||||| ||||||||||  || ||||||||| || |||||||| ||| |||| | || ||||||||||||    
T  8099921 tagtaaatgactcatattttattcttgaaatcaacactaataatcattcccttaatatttgtgtaaaactcaaat 8099847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 1862422 - 1862471
Alignment:
Q  508 taatttgagaatcacttacaaagacacggatcaaattgatggtttactcg 557  Q
    |||||||| ||||||| |||||||||  || |||||||||||||||||||    
T  1862422 taatttgataatcactgacaaagacagtgaacaaattgatggtttactcg 1862471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 575 - 651
Target Start/End: Original strand, 49176971 - 49177047
Alignment:
Q  575 tattctagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactca 651  Q
    |||| ||||||||||||||||||||| | || ||||||||||||||||| ||||||| ||||| |||||||||||||    
T  49176971 tattttagtaaatgacacatattttacctttgaaatcaacattattaattatttccttaatacccgtataaaactca 49177047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 580 - 655
Target Start/End: Complemental strand, 15444540 - 15444465
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatg 655  Q
    |||||||| | |||||||||| |||||||||||||| ||||||||||||||| ||||  | |||||||||||||||    
T  15444540 tagtaaataatacatattttaccattaaaatcaacactattaatcatttccttaataaccatataaaactcaaatg 15444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 1818462 - 1818400
Alignment:
Q  329 tgttttcgtaagggattctcaaattaatgtatgattctattaatatttttaaatagtttctgt 391  Q
    |||||| ||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||    
T  1818462 tgtttttgtaagtgattctcaaattaatatctgactctattaatattttaaaatagtttctgt 1818400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 558
Target Start/End: Original strand, 1818421 - 1818487
Alignment:
Q  492 taatagagttagggattaatttgagaatcacttacaaagacacggatcaaattgatggtttactcgg 558  Q
    ||||||||| ||  |||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||    
T  1818421 taatagagtcagatattaatttgagaatcacttacaaaaacaaggaccaacttgatggtttactcgg 1818487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 492 - 555
Target Start/End: Complemental strand, 6061653 - 6061590
Alignment:
Q  492 taatagagttagggattaatttgagaatcacttacaaagacacggatcaaattgatggtttact 555  Q
    ||||| ||||| ||| |||||||||||||||||||||||||   || |||||||||||||||||    
T  6061653 taataaagttaaggactaatttgagaatcacttacaaagacgatgaccaaattgatggtttact 6061590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 628
Target Start/End: Complemental strand, 3158063 - 3158026
Alignment:
Q  591 acatattttatcattaaaatcaacattattaatcattt 628  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3158063 acatattttatcattaaaatcaatattattaatcattt 3158026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 555
Target Start/End: Complemental strand, 40649862 - 40649755
Alignment:
Q  451 taattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattgat 547  Q
    |||||||||| ||||| ||||||| ||  |||||||| |||||   ||||| ||| | | ||||||||||||||||||||||||||  || ||| |||||    
T  40649862 taattgagaaacttttaacaaagacatgtaccattttgaaatattaatagaattaagaactaatttgagaatcacttacaaagacagagaacaatttgat 40649763  T
Q  548 ggtttact 555  Q
    | ||||||    
T  40649762 gatttact 40649755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 628
Target Start/End: Original strand, 31092278 - 31092326
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcattt 628  Q
    |||||||||| ||| ||||| ||||||||||||| ||||||||||||||    
T  31092278 tagtaaatgatacacattttgtcattaaaatcaatattattaatcattt 31092326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 449 - 556
Target Start/End: Complemental strand, 38783979 - 38783869
Alignment:
Q  449 tctaattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattg 545  Q
    ||||||| |||| ||||| ||||||| | |||| |||||||||||   ||||||| | ||| |||||||| | | ||||||||||| |  ||||||| ||    
T  38783979 tctaattaagaaacttttgacaaagacaatgactattttaaaatattaatagagtcatggactaatttgaaagtgacttacaaagataaagatcaaactg 38783880  T
Q  546 atggtttactc 556  Q
    |||||||||||    
T  38783879 atggtttactc 38783869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 15395193 - 15395256
Alignment:
Q  329 tgttttcgtaagggattctcaaattaatgtatgattctattaatatttttaaatagtttctgtc 392  Q
    |||||| ||||  ||||||||||||| | ||||| |||||||||||||| ||||||| ||||||    
T  15395193 tgtttttgtaaatgattctcaaattagtctatgactctattaatattttaaaatagtctctgtc 15395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 655
Target Start/End: Original strand, 11642237 - 11642299
Alignment:
Q  593 atattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatg 655  Q
    |||||||| |||||||||||||| |||||||||||| || ||||  | | |||||||||||||    
T  11642237 atattttaccattaaaatcaacaatattaatcattttcttaataaccatgtaaaactcaaatg 11642299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 586 - 680
Target Start/End: Original strand, 44122280 - 44122374
Alignment:
Q  586 atgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatataagatggaggga 680  Q
    |||| |||||||||  |||||||||||||| ||||||||||||| | | ||   || |||| ||||||||| ||| ||||||| ||| |||||||    
T  44122280 atgatacatatttttccattaaaatcaacactattaatcatttctttagtaactgtgtaaatctcaaatgggacacctaatatgagacggaggga 44122374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 545
Target Start/End: Original strand, 40650064 - 40650101
Alignment:
Q  508 taatttgagaatcacttacaaagacacggatcaaattg 545  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  40650064 taatttgagaatcacttacaaagacatggaccaaattg 40650101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 580 - 653
Target Start/End: Original strand, 14063382 - 14063455
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaa 653  Q
    |||||||| | |||||||||| ||||||||||||||||| |||||||||||| |||| |||| |||||||||||    
T  14063382 tagtaaattaaacatattttaccattaaaatcaacattactaatcatttccttaatagtcgtgtaaaactcaaa 14063455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 580 - 653
Target Start/End: Original strand, 14373410 - 14373483
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaa 653  Q
    |||||||| | |||||||||| ||||||||||||||||| |||||||||||| |||| |||| |||||||||||    
T  14373410 tagtaaattaaacatattttaccattaaaatcaacattactaatcatttccttaatagtcgtgtaaaactcaaa 14373483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 451 - 556
Target Start/End: Complemental strand, 42710002 - 42709894
Alignment:
Q  451 taattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattgat 547  Q
    |||||||||| ||||| ||||||| |||||| |||||||||||   |||||||  | || | |||||||||||||||||||||||| ||| ||| |||||    
T  42710002 taattgagaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagacagggaccaatttgat 42709903  T
Q  548 ggtttactc 556  Q
     ||||||||    
T  42709902 agtttactc 42709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 581 - 628
Target Start/End: Original strand, 31327500 - 31327547
Alignment:
Q  581 agtaaatgacacatattttatcattaaaatcaacattattaatcattt 628  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  31327500 agtaaatgatacatattttatcattaaaatcaacattattcatcattt 31327547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 450 - 556
Target Start/End: Original strand, 41008915 - 41009024
Alignment:
Q  450 ctaattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattga 546  Q
    ||||||||||| ||||| |||||||||  ||| |||||||||||   ||||||| || ||||||||||| ||| ||||||||| |||  || ||| |||     
T  41008915 ctaattgagaaacttttaacaaagatagagactattttaaaatattaatagagtcagagattaatttgaaaatgacttacaaaaacagtgaccaagttgg 41009014  T
Q  547 tggtttactc 556  Q
    ||||||||||    
T  41009015 tggtttactc 41009024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 581 - 629
Target Start/End: Complemental strand, 27170823 - 27170775
Alignment:
Q  581 agtaaatgacacatattttatcattaaaatcaacattattaatcatttc 629  Q
    ||||| ||| ||| |||||| ||||||||||||||||||||||||||||    
T  27170823 agtaattgatacacattttaccattaaaatcaacattattaatcatttc 27170775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 652
Target Start/End: Original strand, 29121569 - 29121641
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaa 652  Q
    |||||||| | |||||||||| |||||||||||||| |||| |||||||||| | ||  ||| ||||||||||    
T  29121569 tagtaaattagacatattttaccattaaaatcaacaatattgatcatttccttagtaaccgtgtaaaactcaa 29121641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 626
Target Start/End: Original strand, 15464744 - 15464790
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcat 626  Q
    |||||||||| ||| |||||| |||||||||||||| ||||||||||    
T  15464744 tagtaaatgatacacattttaccattaaaatcaacactattaatcat 15464790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 636
Target Start/End: Complemental strand, 2850929 - 2850888
Alignment:
Q  595 attttatcattaaaatcaacattattaatcatttcctcaata 636  Q
    ||||||||||| |||||||||| |||||||||||||| ||||    
T  2850929 attttatcattgaaatcaacataattaatcatttccttaata 2850888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 4088231 - 4088186
Alignment:
Q  584 aaatgacacatattttatcattaaaatcaacattattaatcatttc 629  Q
    |||| ||||| ||||||||||||||||||||| ||||||| |||||    
T  4088231 aaataacacacattttatcattaaaatcaacactattaattatttc 4088186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 628
Target Start/End: Original strand, 4926040 - 4926077
Alignment:
Q  591 acatattttatcattaaaatcaacattattaatcattt 628  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  4926040 acatattttatcattaaaatcaacactattaataattt 4926077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 636
Target Start/End: Original strand, 13962040 - 13962081
Alignment:
Q  595 attttatcattaaaatcaacattattaatcatttcctcaata 636  Q
    |||||||||||||||||||||  |||||||||||||| ||||    
T  13962040 attttatcattaaaatcaacacaattaatcatttccttaata 13962081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 629
Target Start/End: Complemental strand, 27215670 - 27215621
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttc 629  Q
    |||||| ||||||| ||||||  || ||||||||||||||||||||||||    
T  27215670 tagtaattgacacacattttactataaaaatcaacattattaatcatttc 27215621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 574 - 655
Target Start/End: Complemental strand, 34438061 - 34437980
Alignment:
Q  574 atattctagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatg 655  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||  | ||||  ||| |||||||||||||    
T  34438061 atattttagtaaatgatacatattttgtcattaaaatcaacattattaatcatttttttaataaccgtgtaaaactcaaatg 34437980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 449 - 556
Target Start/End: Original strand, 22191505 - 22191616
Alignment:
Q  449 tctaattgagaagctttttacaaa-gatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaatt 544  Q
    ||||||||| || ||||| ||||| || || ||| |||||||||||   ||||||| ||||| |||||||||| | |||||||||| || ||||||||||    
T  22191505 tctaattgaaaaacttttaacaaaagacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaaggcaaggatcaaatt 22191604  T
Q  545 gatggtttactc 556  Q
    | ||||||||||    
T  22191605 ggtggtttactc 22191616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 575 - 680
Target Start/End: Original strand, 38763602 - 38763707
Alignment:
Q  575 tattctagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatataagatg 674  Q
    |||| |||||||||| ||| |||||| |||||||||||||| || ||| |||||||| ||||  ||| ||||||||||| || ||| ||||| | ||| |    
T  38763602 tattttagtaaatgaaacacattttaccattaaaatcaacactactaaccatttccttaataaccgtgtaaaactcaaaagggacacctaatttgagacg 38763701  T
Q  675 gaggga 680  Q
    ||||||    
T  38763702 gaggga 38763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 631
Target Start/End: Original strand, 27866565 - 27866601
Alignment:
Q  595 attttatcattaaaatcaacattattaatcatttcct 631  Q
    |||||||||||||||||||||||||||||||||||||    
T  27866565 attttatcattaaaatcaacattattaatcatttcct 27866601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 590 - 668
Target Start/End: Complemental strand, 30832161 - 30832083
Alignment:
Q  590 cacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatat 668  Q
    ||||||||||  |||||||||||||| ||||||| |||| ||  ||| |||| |||||||||||||  ||| |||||||    
T  30832161 cacatattttgccattaaaatcaacactattaattattttctttataatcgtgtaaaactcaaatgaaacacctaatat 30832083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 582 - 628
Target Start/End: Complemental strand, 33407026 - 33406980
Alignment:
Q  582 gtaaatgacacatattttatcattaaaatcaacattattaatcattt 628  Q
    |||||||| |||||||||| |||||||||||||||| ||| ||||||    
T  33407026 gtaaatgaaacatattttaccattaaaatcaacatttttagtcattt 33406980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 32502837 - 32502788
Alignment:
Q  508 taatttgagaatcacttacaaagacacggatcaaattgatggtttactcg 557  Q
    |||||||||||| ||||||||| ||| |||  ||||||||||||||||||    
T  32502837 taatttgagaatgacttacaaaaacaaggacaaaattgatggtttactcg 32502788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 575 - 654
Target Start/End: Original strand, 8979152 - 8979231
Alignment:
Q  575 tattctagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaat 654  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||| | |||| |||  ||||| ||||||    
T  8979152 tattcgagtaaataacagatattttatcattaaaatcaacattattaataatttctttaataatcgcgtaaaattcaaat 8979231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 666
Target Start/End: Complemental strand, 44225733 - 44225661
Alignment:
Q  594 tattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaat 666  Q
    ||||||| |||||||||||||||||||||||||||| | ||||    |||||||||||||||| ||| |||||    
T  44225733 tattttaccattaaaatcaacattattaatcatttcgttaataacaatataaaactcaaatgggacaactaat 44225661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 580 - 631
Target Start/End: Complemental strand, 5879046 - 5878995
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcct 631  Q
    |||| ||||| |||||||||| |||||||||||||| |||||||||||||||    
T  5879046 tagtgaatgatacatattttaccattaaaatcaacaatattaatcatttcct 5878995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 580 - 655
Target Start/End: Complemental strand, 6323391 - 6323317
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatg 655  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||||||  | |||| | || |||||||||||||    
T  6323391 tagtaaatgatacatattt-atcattaaaatcaaaattattaatcatttttttaataattgtgtaaaactcaaatg 6323317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 12899843 - 12899781
Alignment:
Q  593 atattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatg 655  Q
    ||||||||| ||||||||||||||||||||| ||||| |  ||| | ||||||||||||||||    
T  12899843 atattttattattaaaatcaacattattaattatttctttgataatggtataaaactcaaatg 12899781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 135720 - 135675
Alignment:
Q  584 aaatgacacatattttatcattaaaatcaacattattaatcatttc 629  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||    
T  135720 aaatgacacatattttatcattaaaatcgatattattaatcttttc 135675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 629
Target Start/End: Original strand, 136835 - 136884
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttc 629  Q
    ||||||| |||| ||||||||| ||||||||||||| |||||||||||||    
T  136835 tagtaaacgacaaatattttattattaaaatcaacactattaatcatttc 136884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 656
Target Start/End: Complemental strand, 3117075 - 3117001
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatgg 656  Q
    |||||||||||||||  |||| |||| ||||||||| ||||||||||||| | ||||| | | ||||||||||||||    
T  3117075 tagtaaatgacacat--tttaccattgaaatcaacactattaatcatttcgttaatacccatgtaaaactcaaatgg 3117001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 628
Target Start/End: Complemental strand, 41687438 - 41687403
Alignment:
Q  593 atattttatcattaaaatcaacattattaatcattt 628  Q
    ||||||||||||||||||||| ||||||||||||||    
T  41687438 atattttatcattaaaatcaatattattaatcattt 41687403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 623
Target Start/End: Complemental strand, 35894978 - 35894937
Alignment:
Q  582 gtaaatgacacatattttatcattaaaatcaacattattaat 623  Q
    |||||||| ||| |||||| ||||||||||||||||||||||    
T  35894978 gtaaatgaaacacattttaacattaaaatcaacattattaat 35894937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 666
Target Start/End: Original strand, 12340019 - 12340104
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaat 666  Q
    |||||||| | |||||||| |||||||||||||||| || ||||||||| || |||| |||| ||||||||||| || |||||||||    
T  12340019 tagtaaattaaacatattt-atcattaaaatcaacactactaatcattttcttaataatcgtgtaaaactcaaagggaacatctaat 12340104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 654
Target Start/End: Original strand, 26592381 - 26592455
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaat 654  Q
    |||||||||| ||| |||||| |||||||||||| ||||||||||||||||| |||| | |  ||||||||||||    
T  26592381 tagtaaatgatacacattttaccattaaaatcaatattattaatcatttccttaataattgcctaaaactcaaat 26592455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 451 - 557
Target Start/End: Complemental strand, 8447028 - 8446919
Alignment:
Q  451 taattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattgat 547  Q
    ||||||| || ||||| ||||||| |||||| ||||| |||||   ||||| | || || |||||||| ||||||||| ||||| | | |||||||||||    
T  8447028 taattgaaaaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaagaaaggaatcaaattgat 8446929  T
Q  548 ggtttactcg 557  Q
    ||||||||||    
T  8446928 ggtttactcg 8446919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 451 - 557
Target Start/End: Complemental strand, 8455832 - 8455723
Alignment:
Q  451 taattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattgat 547  Q
    ||||||| || ||||| ||||||| |||||| ||||| |||||   ||||| | || || |||||||| ||||||||| ||||| | | |||||||||||    
T  8455832 taattgaaaaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaagaaaggaatcaaattgat 8455733  T
Q  548 ggtttactcg 557  Q
    ||||||||||    
T  8455732 ggtttactcg 8455723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 580 - 654
Target Start/End: Complemental strand, 17398949 - 17398876
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaat 654  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| ||||| | |||| | || ||||||||||||    
T  17398949 tagtaaatgaaacatattttatcattaaaatc-acactattaataatttctttaataatagtgtaaaactcaaat 17398876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 580 - 642
Target Start/End: Original strand, 21018818 - 21018880
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgta 642  Q
    |||||||| | ||||||||||||||||||||||| | || |||||||||||| |||| |||||    
T  21018818 tagtaaataatacatattttatcattaaaatcaatagtagtaatcatttccttaataatcgta 21018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 628
Target Start/End: Original strand, 2423680 - 2423725
Alignment:
Q  583 taaatgacacatattttatcattaaaatcaacattattaatcattt 628  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||    
T  2423680 taaatgatacatattttaccattaaaatcaacaatattaatcattt 2423725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 26330281 - 26330228
Alignment:
Q  440 aaacattggtctaattgagaagctttttacaaagatattgaccattttaaaata 493  Q
    |||||| | |||||||||||| ||||| ||||||| |||||| |||||||||||    
T  26330281 aaacatggatctaattgagaaacttttgacaaagacattgactattttaaaata 26330228  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 625
Target Start/End: Original strand, 31490603 - 31490648
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatca 625  Q
    |||||||| | ||| ||||||||||||||||||||| |||||||||    
T  31490603 tagtaaataaaacacattttatcattaaaatcaacactattaatca 31490648  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 668
Target Start/End: Complemental strand, 11024958 - 11024864
Alignment:
Q  574 atattctagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatat 668  Q
    ||||| |||||||||| ||||||| || |||||||||||||| |||||||||||| || |||   ||| |||||||||||||  ||| |||||||    
T  11024958 atattttagtaaatgaaacatattataccattaaaatcaacactattaatcattttcttaatttccgtgtaaaactcaaatgagacacctaatat 11024864  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 36217440 - 36217358
Alignment:
Q  584 aaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaat 666  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||  | |||| || | |||||||||||||  |||||||||    
T  36217440 aaatgatacatattttttcattaaaataaacattattaatcatttttttaataatcatgtaaaactcaaatgagacatctaat 36217358  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 502 - 556
Target Start/End: Complemental strand, 13302168 - 13302114
Alignment:
Q  502 agggattaatttgagaatcacttacaaagacacggatcaaattgatggtttactc 556  Q
    ||||| |||||||||||| ||||||||||||| ||||||| ||| ||||||||||    
T  13302168 agggactaatttgagaatgacttacaaagacagggatcaatttggtggtttactc 13302114  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 23915492 - 23915436
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaata 636  Q
    |||||||| | |||||||||| |||||||||||||| || |||||||||||| ||||    
T  23915492 tagtaaattaaacatattttaccattaaaatcaacactactaatcatttccttaata 23915436  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 591 - 653
Target Start/End: Original strand, 17121312 - 17121374
Alignment:
Q  591 acatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaa 653  Q
    ||||||||||||||||||||||||| ||  |||||||| || |||| | || |||||||||||    
T  17121312 acatattttatcattaaaatcaacaataccaatcattttcttaataattgtgtaaaactcaaa 17121374  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 556
Target Start/End: Original strand, 39840886 - 39840994
Alignment:
Q  451 taattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattgat 547  Q
    ||||||||||  |||| |||||||||  ||| ||||| |||||   ||| ||||||| | |||||||||||||||||||||||| |  |||||||||| |    
T  39840886 taattgagaaaattttaacaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaagatatagatcaaattggt 39840985  T
Q  548 ggtttactc 556  Q
    |||||||||    
T  39840986 ggtttactc 39840994  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 581 - 654
Target Start/End: Original strand, 27151553 - 27151626
Alignment:
Q  581 agtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaat 654  Q
    ||||||||| ||| ||||||||||||||| ||||| ||||||||||||||| | ||  |||||||||| |||||    
T  27151553 agtaaatgatacacattttatcattaaaaccaacactattaatcatttccttattagccgtataaaacccaaat 27151626  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 39840700 - 39840636
Alignment:
Q  492 taatagagttagggattaatttgagaatcacttacaaagacacggatcaaattgatggtttactc 556  Q
    ||||||||| || || |||||||||||||||||||||||||| ||||||| |||||  |||||||    
T  39840700 taatagagtcagagactaatttgagaatcacttacaaagacagggatcaatttgataatttactc 39840636  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 580 - 679
Target Start/End: Original strand, 10973595 - 10973694
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatataagatggaggg 679  Q
    |||||||||| ||| ||||| |||||||||| ||||||||||||||||| || |||| | || ||||||| |||    ||||||||||| ||| ||||||    
T  10973595 tagtaaatgatacacattttgtcattaaaataaacattattaatcattttcttaataattgtgtaaaacttaaacatgacatctaatatgagacggaggg 10973694  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 451 - 548
Target Start/End: Complemental strand, 55447031 - 55446931
Alignment:
Q  451 taattgagaagctttttacaaagatattgaccattttaaaata---atagagttagggattaatttgagaatcacttacaaagacacggatcaaattgat 547  Q
    ||||||||||  |||| ||||||| || ||| ||||| |||||   ||||||| | |||||||||||| ||||||||||||||| | ||| |||||||||    
T  55447031 taattgagaaaattttaacaaagacatggactattttgaaatattaatagagtcatggattaatttgacaatcacttacaaagatagggaccaaattgat 55446932  T
Q  548 g 548  Q
    |    
T  55446931 g 55446931  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 492 - 533
Target Start/End: Complemental strand, 42045812 - 42045771
Alignment:
Q  492 taatagagttagggattaatttgagaatcacttacaaagaca 533  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  42045812 taatagagttatggattaatttgaggatcacttacaaagaca 42045771  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 48338590 - 48338654
Alignment:
Q  492 taatagagttagggattaatttgagaatcacttacaaagacacggatcaaattgatggtttactc 556  Q
    ||||||||| || || |||||||| ||||||||||||| ||| || |||||||| ||||||||||    
T  48338590 taatagagtcagagactaatttgataatcacttacaaatacatggttcaaattggtggtttactc 48338654  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 631
Target Start/End: Original strand, 53560276 - 53560327
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcct 631  Q
    |||||||||| ||| |||||| ||| ||||||||||| ||||||||||||||    
T  53560276 tagtaaatgatacaaattttaccatcaaaatcaacataattaatcatttcct 53560327  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 628
Target Start/End: Original strand, 3442113 - 3442158
Alignment:
Q  583 taaatgacacatattttatcattaaaatcaacattattaatcattt 628  Q
    |||| |||||||||||| |||||||||||||||||| || ||||||    
T  3442113 taaaagacacatattttgtcattaaaatcaacattactattcattt 3442158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 562
Target Start/End: Complemental strand, 28860530 - 28860461
Alignment:
Q  493 aatagagttagggattaatttgagaatcacttacaaagacacggatcaaattgatggtttactcggtttt 562  Q
    |||||||| | |||||||||||||| | ||||||||| ||| ||||||  || |||||||||||| ||||    
T  28860530 aatagagtcatggattaatttgagagtgacttacaaatacatggatcattttaatggtttactcgatttt 28860461  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 41287824 - 41287763
Alignment:
Q  607 aaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatat 668  Q
    ||||||||| |||||||||||||||||||||   | |||||||||||||  ||| |||||||    
T  41287824 aaatcaacaatattaatcatttcctcaatacctatgtaaaactcaaatgtgacacctaatat 41287763  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 580 - 678
Target Start/End: Original strand, 126230 - 126328
Alignment:
Q  580 tagtaaatgacacatattttatcattaaaatcaacattattaatcatttcctcaatactcgtataaaactcaaatggcacatctaatataagatggagg 678  Q
    |||||||||| ||| ||||| |||||||||| |||| ||||||||||||||| |||| | || ||||||| |||    ||||||||||| ||| |||||    
T  126230 tagtaaatgatacacattttgtcattaaaataaacactattaatcatttccttaataattgtgtaaaacttaaacatgacatctaatatgagacggagg 126328  T

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Target: scaffold0302 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 641
Target Start/End: Original strand, 16172 - 16218
Alignment:
Q  595 attttatcattaaaatcaacattattaatcatttcctcaatactcgt 641  Q
    |||||||||||||||||||||  |||||||||||||| |||| ||||    
T  16172 attttatcattaaaatcaacacaattaatcatttccttaataatcgt 16218  T

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Target: scaffold0198 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 553
Target Start/End: Original strand, 11930 - 11975
Alignment:
Q  508 taatttgagaatcacttacaaagacacggatcaaattgatggttta 553  Q
    |||||||||| | ||||||||||||| ||||||| |||||||||||    
T  11930 taatttgagagtgacttacaaagacatggatcaatttgatggttta 11975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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