View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1275R-Insertion-3 (Length: 205)
Name: NF1275R-Insertion-3
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275R-Insertion-3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0392 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 56068078 - 56067880
Alignment:
| Q |
7 |
caagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56068078 |
caagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcat |
56067979 |
T |
|
| Q |
107 |
cgtttctttagcttctttcgatatctttgctctcgccggtaacgctttcttcatgatcctacccacgtttgctatgggaagaagcctttcttgcagtaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56067978 |
cgtttctttagcttctttcgatatctttgctctcgtcggtaacgctttcttcatgatcctacccacgtttgctatgggaagaagcctttcttgcagtaa |
56067880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 9722815 - 9722623
Alignment:
| Q |
8 |
aagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatc |
107 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || |||||||| || || |||||||||||||||||||| | |
|
|
| T |
9722815 |
aagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctccagttatgaaactgataaactctgatacacactcttgtact |
9722716 |
T |
|
| Q |
108 |
gtttctttagcttctttcgatatctttgctctcgccggtaacgctttcttcatgatcctacccacgtttgctatgggaagaagcctttcttgc |
200 |
Q |
| |
|
|||||||| |||||||| || |||||||| | || ||||| || || ||||||||||||| |||||||||||| ||||||| ||| |||||| |
|
|
| T |
9722715 |
gtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatcctactcacgtttgctattggaagaaacctatcttgc |
9722623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 41866690 - 41866545
Alignment:
| Q |
36 |
ttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtttctttagcttctttcgatatctttg |
135 |
Q |
| |
|
|||||| |||||||||| || || |||||||| || |||||||| |||||||| |||||||| || |||| |||||| ||||| |||||||| ||||| | |
|
|
| T |
41866690 |
ttctctctctgacacttatcggaagcttcaccggtgatgaagctgatgaactccgatacacattcctgcaccgtttccttagcatctttcgagatcttcg |
41866591 |
T |
|
| Q |
136 |
ctctcgccggtaacgctttcttcatgatcctacccacgtttgctat |
181 |
Q |
| |
|
| | || |||||||| |||||||| || || | |||||||||||| |
|
|
| T |
41866590 |
cgtttgctggtaacgccttcttcattattctgctcacgtttgctat |
41866545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 39786325 - 39786450
Alignment:
| Q |
11 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtt |
110 |
Q |
| |
|
||||||||| || | |||||| | |||||| || |||||||| |||||||||||||| |||| || || | |||||||| |||||||||||||| ||| |
|
|
| T |
39786325 |
atcatcaccattcactgtcttgcgcttctccttgtgacacttgtcagatgcttcaccagttacaaaactaacaaactctgagacacactcttgcatggtt |
39786424 |
T |
|
| Q |
111 |
tctttagcttctttcgatatctttgc |
136 |
Q |
| |
|
|||||||| |||||||| || ||||| |
|
|
| T |
39786425 |
tctttagcatctttcgagatttttgc |
39786450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 38281757 - 38281641
Alignment:
| Q |
8 |
aagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatc |
107 |
Q |
| |
|
|||||||||||| || ||||| ||||| || ||| |||||||||| ||||| |||||||| || ||||| || |||||||| || ||||| ||||| | | |
|
|
| T |
38281757 |
aagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaactaatgaactcagagacacattcttgaacc |
38281658 |
T |
|
| Q |
108 |
gtttctttagcttcttt |
124 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
38281657 |
gtttcttttgcttcttt |
38281641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 23569873 - 23569695
Alignment:
| Q |
11 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtt |
110 |
Q |
| |
|
|||||| ||||| || ||||||| |||||| |||||||| || || ||||| || || |||||||| ||||||||||| ||||||||||| | ||| |
|
|
| T |
23569873 |
atcatcgccgttgatcgtcttccgcttctcacgttgacacttatcggaggcttcgccggtgatgaagctgatgaactctgaaacacactcttgaactgtt |
23569774 |
T |
|
| Q |
111 |
tctttagcttctttcgatatctttgctctcgccggtaacgctttcttcatgatcctacccacgtttgctatgggaagaa |
189 |
Q |
| |
|
|| || || ||||| || ||||| || |||| |||| ||||| ||||||||||| | ||||||||||| ||||||| |
|
|
| T |
23569773 |
tcctttgcgtcttttgagatcttcgcgttcgctggtagtgcttttttcatgatcctgcttacgtttgctattggaagaa |
23569695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 22140004 - 22139957
Alignment:
| Q |
11 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcaga |
58 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||||| ||||| |
|
|
| T |
22140004 |
atcatcaccgttaatcgtcttcctcttctctctctgacacttatcaga |
22139957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 40539394 - 40539347
Alignment:
| Q |
11 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcaga |
58 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||||| ||||| |
|
|
| T |
40539394 |
atcatcaccgttaatcgtcttcctcttctctctctgacacttatcaga |
40539347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 14740 - 14812
Alignment:
| Q |
57 |
gatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtttctttagcttctttcgata |
129 |
Q |
| |
|
|||||||||| || | ||||||||||||||| || ||||| |||||||| ||||| || ||||| ||||||| |
|
|
| T |
14740 |
gatgcttcactcgtcacgaagcttatgaactcggacacacattcttgcattgtttcctttgcttccttcgata |
14812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University