View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275R-Insertion-5 (Length: 228)
Name: NF1275R-Insertion-5
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275R-Insertion-5 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 16154925 - 16154705
Alignment:
| Q |
9 |
aattgccctgtgctcgtacaaaatttaaatgnnnnnnnttagagatttatcatttataatttaacaactatgtgataatggtggagaaga-tattacctg |
107 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16154925 |
aattgccctgtgctcgtacaaaatttgaatgaaaaaaattagagatttatcatttataatttaacaactatgtgataatggtggagaagactattacctg |
16154826 |
T |
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| Q |
108 |
caacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggttcgtcattatacaattcaaaaatatgttggtttgttactcatattgagt |
207 |
Q |
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| T |
16154825 |
caacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggttcgtcattatacaattcaaaaatatgttggtttgttattcatattgagt |
16154726 |
T |
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| Q |
208 |
gtctatttatcaattattgag |
228 |
Q |
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||||||||||||||||||||| |
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| T |
16154725 |
gtctatttatcaattattgag |
16154705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 16176646 - 16176423
Alignment:
| Q |
9 |
aattgccctgtgctcgtacaaaatttaaatgnnnnnnntt-agagatttatcatttataatttaacaactatgtgataatggtggagaaga-tattacct |
106 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16176646 |
aattgccctgtgctcgtacaaaatttaaatgaattttttttagagatttatcatttaaaatttaacaactatgtgataatggtggagaagactattacct |
16176547 |
T |
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| Q |
107 |
gcaacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggttcgtcattatacaattcaaaaatatgttggtttgtta--ctcatattg |
204 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
16176546 |
gcaacaactaaaaccaagatggcaaagaaactgaaagatgttgacatttggttcgtcattatacaattcaaaaatattttggtttgttattcccatattc |
16176447 |
T |
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| Q |
205 |
agtgtctatttatcaattattgag |
228 |
Q |
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| T |
16176446 |
agtgtctatttatgaattattgag |
16176423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 16146293 - 16146071
Alignment:
| Q |
9 |
aattgccctgtgctcgtacaaaatttaaatgnnnnnnnttagagatttatcatttataatttaacaactatgtgataatggtggagaaga-tattacctg |
107 |
Q |
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||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16146293 |
aattgccctatgctcaaacaaaatttaaatgaaattttttagagatttatcatttataatttaacaactatgtgataatggtggagaagactattacctg |
16146194 |
T |
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| Q |
108 |
caacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggttcgtcattatacaattcaaaaatatgttggtttgttactc--atattga |
205 |
Q |
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| T |
16146193 |
caacaactaaaaccaagatgacaaagaaactgaaagatgttgacatttggttcgtcattatacaattaaaaaatatgttggtctgttattccaatattga |
16146094 |
T |
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| Q |
206 |
gtgtctatttatcaattattgag |
228 |
Q |
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| T |
16146093 |
gtgtctatttatcaattattgag |
16146071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 16215488 - 16215426
Alignment:
| Q |
99 |
tattacctgcaacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggttcg |
161 |
Q |
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|||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
16215488 |
tattacctgcaacaactaaagccaatatggcaaagaaactgaaagattttgacatttggttcg |
16215426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 16222878 - 16222814
Alignment:
| Q |
99 |
tattacctgcaacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggttcgtc |
163 |
Q |
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| T |
16222878 |
tattacctgcaacaactaaagccaatatggcaaagaaaccgaaagattttgacatttggttcgtc |
16222814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 16211261 - 16211199
Alignment:
| Q |
99 |
tattacctgcaacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggttcg |
161 |
Q |
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|||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
16211261 |
tattacctgcaacaactaaagccaatatggcaaagaaaccgaaagattttgacatttggttcg |
16211199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 16207078 - 16207018
Alignment:
| Q |
99 |
tattacctgcaacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggtt |
159 |
Q |
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|||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||| |
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| T |
16207078 |
tattacctgcaacaactaaagtcaatatggcaaagaaactgaaagattttgacatttggtt |
16207018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 16288464 - 16288407
Alignment:
| Q |
101 |
ttacctgcaacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggt |
158 |
Q |
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|||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||| |
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| T |
16288464 |
ttacctgcggcaactaaaacaaagatggcaaagaaactgaaagattttgacatttggt |
16288407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 16180779 - 16180719
Alignment:
| Q |
99 |
tattacctgcaacaactaaaaccaagatggcaaagaaattgaaagatgttgacatttggtt |
159 |
Q |
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|||||||||||||||||||| | | |||||||||||| ||||||| ||||||||||||| |
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| T |
16180779 |
tattacctgcaacaactaaagctactatggcaaagaaaccgaaagattttgacatttggtt |
16180719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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