View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275R-Insertion-7 (Length: 292)
Name: NF1275R-Insertion-7
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275R-Insertion-7 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 1718233 - 1717955
Alignment:
| Q |
8 |
agatatctcagtcacattgttgagatttgtgttttattcttgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatata |
107 |
Q |
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| T |
1718233 |
agatatctcagtcacattgttgagatttgtgttttattctcgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatata |
1718134 |
T |
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| Q |
108 |
gatgagtatatgactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttggg |
207 |
Q |
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| T |
1718133 |
gatgagtatatgactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttggg |
1718034 |
T |
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| Q |
208 |
aatctccaagttgaaaaaaccatttttaatcctaaagaaaccaatccaaccattctttgcaattccataagtcttgtta |
286 |
Q |
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| T |
1718033 |
aatctccaagttaaaaaaaccatttttaatcctaaagaaaccaatccaaccattctttgcaattccataagtcatgtta |
1717955 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 21263206 - 21263257
Alignment:
| Q |
192 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
243 |
Q |
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| T |
21263206 |
tctagagttatttgggaatatccaagttgaaaaagccatttttaatcctaaa |
21263257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 11852 - 11903
Alignment:
| Q |
192 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
243 |
Q |
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| T |
11852 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
11903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 42934919 - 42934868
Alignment:
| Q |
192 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
243 |
Q |
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| T |
42934919 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
42934868 |
T |
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