View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275R-Insertion-8 (Length: 353)
Name: NF1275R-Insertion-8
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275R-Insertion-8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 39902578 - 39902924
Alignment:
| Q |
7 |
caattatgtggacataggttttcattttaattggttttcttctcacttttctattttgcgtgtcaactggtgcactagtgtgctaaactctgtatactca |
106 |
Q |
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| T |
39902578 |
caattatgtggacataggttttcattttaattggttttcttctcacttttctattttgcgtgtcaactggtgcactagtgtgctaaactctgtatactca |
39902677 |
T |
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| Q |
107 |
atgacaaagttttctgaaaaattacaatgctttttgtggagaatttcaaattttcagaaaagaaaagagtgatggtatttttgaaattttgaggaaccta |
206 |
Q |
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| T |
39902678 |
atgataaagttttctgaaaaattacaatgctttttgtggagaatttcaaattttcagaaaagaaaagagtgatggtatttttgaaattttgaggaaccta |
39902777 |
T |
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| Q |
207 |
tactgttttagaaaccagcgatagcccaatgcatttgtagacctaaacgaatttgaattgaggctttttaatagattgacaaagaaacattaaaaattaa |
306 |
Q |
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| T |
39902778 |
tactgttttagaaaccagtgatagcccaatgcatttgtaggcctgaacgaatttgaattgaggatttttaataggttgacaaagaaacattaaaaattaa |
39902877 |
T |
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| Q |
307 |
gaatcttaaatgtgtaattttatttgaggcatgtcgaacactaatta |
353 |
Q |
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| T |
39902878 |
gaatcataaatatgtaattttatttgaggcatgtcgaacactaatta |
39902924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 16843940 - 16843899
Alignment:
| Q |
297 |
taaaaattaagaatcttaaatgtgtaattttatttgaggcat |
338 |
Q |
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| T |
16843940 |
taaaaattaagaacattaaatgtgtaattttatttgaggcat |
16843899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 12105598 - 12105549
Alignment:
| Q |
297 |
taaaaattaagaatcttaaatgtgtaattttatttgaggcatgtcgaaca |
346 |
Q |
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| T |
12105598 |
taaaaattaagaatcttaaatgtgtaattttatttgaggcatgtcgaaca |
12105549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 29067673 - 29067739
Alignment:
| Q |
283 |
tgacaaagaaacattaaaaattaagaatcttaaatgtgtaattttatttgaggcatgtcgaacactaa |
350 |
Q |
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| T |
29067673 |
tgacaaagaaacat-aaaaattaagaactttaaatgtgtggttttatttgaggtatgtcaaacactaa |
29067739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 28224307 - 28224358
Alignment:
| Q |
297 |
taaaaattaagaatcttaaatgtgtaattttatttgaggcatgtcgaacact |
348 |
Q |
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| T |
28224307 |
taaaaattaagtatcttaaatgtgtaattttatttgagacatgtcgaacact |
28224358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 350
Target Start/End: Original strand, 10228894 - 10229014
Alignment:
| Q |
232 |
ccaatgcatttgtagacctaaa-cgaatttgaattgaggctttttaa-tagattgacaaagaaacattaaaaattaagaatcttaaatgtgtaattttat |
329 |
Q |
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| T |
10228894 |
ccaatgcatttgtatgcctagagcaaatttgaattgaggccttttaaatatgttgacaaaaaaaacataaatattaaaattcttaaatgtgtaattttat |
10228993 |
T |
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| Q |
330 |
ttgaggcatgtcgaacactaa |
350 |
Q |
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| T |
10228994 |
ttgaggcatgtgaaacactaa |
10229014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 14217376 - 14217328
Alignment:
| Q |
302 |
attaagaatcttaaatgtgtaattttatttgaggcatgtcgaacactaa |
350 |
Q |
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| T |
14217376 |
attaagaatcttaaatgtgtaattttatttgaggcatgtcaaatactaa |
14217328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 31169445 - 31169401
Alignment:
| Q |
296 |
ttaaaaattaagaatcttaaatgtgtaattttatttgaggcatgt |
340 |
Q |
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| T |
31169445 |
ttaaaaattaagaacactaaatgtataattttatttgaggcatgt |
31169401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 10547743 - 10547690
Alignment:
| Q |
297 |
taaaaattaagaatcttaaatgtgtaattttatttgaggcatgtcgaacactaa |
350 |
Q |
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| T |
10547743 |
taaaaattaagaatcttaagtagataattttatttgaggcatgtcagacactaa |
10547690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 28593783 - 28593730
Alignment:
| Q |
297 |
taaaaattaagaatcttaaatgtgtaattttatttgaggcatgtcgaacactaa |
350 |
Q |
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| T |
28593783 |
taaaaattaagaacattaaacttgtaatgttatttgaggcatgtcgaacgctaa |
28593730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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