View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1275R-Insertion-9 (Length: 376)
Name: NF1275R-Insertion-9
Description: NF1275R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275R-Insertion-9 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 105 - 376
Target Start/End: Complemental strand, 31197585 - 31197314
Alignment:
| Q |
105 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197585 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
31197486 |
T |
|
| Q |
205 |
ttctcaactccaccacaaccatattgtaataggtttcaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31197485 |
ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaatacaactactatt |
31197386 |
T |
|
| Q |
305 |
ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtctct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197385 |
ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtctct |
31197314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 105 - 376
Target Start/End: Complemental strand, 31176981 - 31176710
Alignment:
| Q |
105 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31176981 |
tgatttgagattaatccaagaaacatgatgtgggtttaagggttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
31176882 |
T |
|
| Q |
205 |
ttctcaactccaccacaaccatattgtaataggtttcaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactatt |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31176881 |
ttgtcaactccaccacaaccatattgtaataggttgcaatgatgccacccatatccggcaccgtaaaccacttatcttcaagtacaataccactactatt |
31176782 |
T |
|
| Q |
305 |
ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtctct |
376 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31176781 |
ttcgagatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatctgaatatagtctct |
31176710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 31197685 - 31197615
Alignment:
| Q |
9 |
accatgacgacgcctcttcactcttgtagcttccgctccatagatgatggaggtagtggacatcattcttt |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31197685 |
accatgacgacgcctcttcactcttgtagcttccgctccgtagatgatggaggtagtggacatcattcttt |
31197615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 31177078 - 31177008
Alignment:
| Q |
9 |
accatgacgacgcctcttcactcttgtagcttccgctccatagatgatggaggtagtggacatcattcttt |
79 |
Q |
| |
|
||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31177078 |
accatgatgatgcctcttcactcttgtagtttccgctccgtagatgatggaggtagtggacatcattcttt |
31177008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 105 - 352
Target Start/End: Complemental strand, 38012 - 37765
Alignment:
| Q |
105 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaat-gtctctgaaattccaatttcaaga |
203 |
Q |
| |
|
||||||| |||||| |||| ||||||||| ||||| | ||||| ||||||||| ||| ||||||||||||| ||| || |||| ||||||||| || |
|
|
| T |
38012 |
tgatttgggattaagtcaaggcacatgatgtaggtttttgggttaatcggtggcctacctttaattgagaaaaaaagtccctaaaat-ccaatttcatga |
37914 |
T |
|
| Q |
204 |
tttctcaactccaccacaaccatattgtaataggtttcaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactat |
303 |
Q |
| |
|
||| |||| |||||||||||| ||||||||| ||| ||| |||| |||||||| |||| ||| ||||| |||||| |||| ||||||||||||||| |
|
|
| T |
37913 |
tttgtcaattccaccacaaccctattgtaatgagttgcaacgatgtggcccatatccggcaatgtcaaccacttatctagaagtgcaataccactactat |
37814 |
T |
|
| Q |
304 |
tttcgggatgatgcaatccattcaagatatagttaaaacgatcatcact |
352 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
37813 |
tttcgtgagtatgcaatccattcaaaatatagttataacgatcatcact |
37765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 20905380 - 20905502
Alignment:
| Q |
113 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac |
212 |
Q |
| |
|
|||||| ||||| |||||||||| |||| | ||||||||||||||| |||||||||| |||||||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
20905380 |
gattaagccaaggcacatgatgtgagtttttgggttaagcggtggcctacctctaattgggaaaaatgtctccgaaattccaatattgggatttgtcaac |
20905479 |
T |
|
| Q |
213 |
tccaccacaaccatattgtaata |
235 |
Q |
| |
|
||||||| |||| |||||||||| |
|
|
| T |
20905480 |
tccaccataaccctattgtaata |
20905502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 352
Target Start/End: Original strand, 6963082 - 6963248
Alignment:
| Q |
186 |
gaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggtttcaatgatgccacccatatctggcactgtaaaccatttatcttcaa |
285 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||| |||||||||| ||| ||| |||| || ||| || | | | ||||| ||||| |||| |
|
|
| T |
6963082 |
gaaattccaatttcatgatttgtcaactccactacaacactattgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaa |
6963181 |
T |
|
| Q |
286 |
gtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacgatcatcact |
352 |
Q |
| |
|
| ||||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
6963182 |
atgcaataccgctactattttgaggaggatgcaaatcattcaagatatagttaaaataatcatcact |
6963248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 346
Target Start/End: Complemental strand, 25140177 - 25139943
Alignment:
| Q |
113 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaa-aaatgtctctgaaattccaatttcaagatttctcaa |
211 |
Q |
| |
|
|||||| |||||| |||||||||| |||| | || | |||||||||| ||||||||| ||| ||| ||||| |||||| |||| || || || |||| |
|
|
| T |
25140177 |
gattaagccaagacacatgatgtgagtttttgggtaatgcggtggcctatctctaattgggaataaaagtctccgaaatttcaatgtcgtgaattatcaa |
25140078 |
T |
|
| Q |
212 |
ctccaccacaaccatattgtaataggtttcaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcggga |
311 |
Q |
| |
|
|||||| |||||| |||||||||| ||| ||| |||| | ||| || || | || ||||| ||||| |||| | ||| |||| ||||||||| |||| |
|
|
| T |
25140077 |
ctccactacaaccttattgtaataagttgcaacgatgtgaatcatgtccgggagcgtcaaccacttatcatcaaatgcaacaccattactattttgggga |
25139978 |
T |
|
| Q |
312 |
tgatgcaatccattcaagatatagttaaaacgatc |
346 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
25139977 |
ggatgcaaggcattcaagatatagttaaaacgatc |
25139943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 344
Target Start/End: Complemental strand, 40091027 - 40090838
Alignment:
| Q |
154 |
gtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggtttcaatgatgccacc |
253 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||| | |||||| ||||| ||||||| || |||||| |||||||| | ||| ||| |||| ||| |
|
|
| T |
40091027 |
gtggtctgcctctaattgggaaaaa-gtctctgaaatactgatttcatgatttgtcaactcaactacaaccctattgtaacaagttgcaacgatgtgacc |
40090929 |
T |
|
| Q |
254 |
catatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacga |
344 |
Q |
| |
|
||| | || | || ||||| |||||||| | | |||| ||||||||||||| |||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
40090928 |
catgttcggtaacgtcaaccacttatcttctaatgcaattccactactattttggggagggtgcaaacaattcaagatatagttaaaacga |
40090838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 338
Target Start/End: Complemental strand, 8119769 - 8119576
Alignment:
| Q |
146 |
gttaagcggtggcctgcctctaattgag-aaaaatgtctctgaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggtttcaat |
244 |
Q |
| |
|
||||| ||| ||||| |||||||||| | ||||| |||||||||||||||||||||| | | | |||||||||| | |||||||||| ||| ||| |
|
|
| T |
8119769 |
gttaatcggaggcctacctctaattggggaaaaaaatctctgaaattccaatttcaaggctagttatctccaccacatgcctattgtaataagttgcaac |
8119670 |
T |
|
| Q |
245 |
gatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagtta |
338 |
Q |
| |
|
|||| || |||||| | || ||| |||||||||||| | |||| | |||||||| ||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
8119669 |
gatgtgactcatatccgacaatgtcaaccatttatctggaggtactaaaccactaccatttttgggaggatgcaatccatttaagatatagtta |
8119576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 343
Target Start/End: Original strand, 25854218 - 25854448
Alignment:
| Q |
113 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac |
212 |
Q |
| |
|
|||||| |||||| ||||||||||| ||| | ||||| || | || |||||||||| | |||| |||||||||||||||||||||||| | | | | |
|
|
| T |
25854218 |
gattaacccaagacacatgatgtggcttttcgggttaatcgaagatctacctctaattgggtaaaaagtctctgaaattccaatttcaagactagttatc |
25854317 |
T |
|
| Q |
213 |
tccaccacaaccatattgtaataggtttcaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggat |
312 |
Q |
| |
|
||||| ||| | |||| || || ||||||| |||| || |||||| | || ||| |||||||||||| | || |||||||||| |||||||||| |
|
|
| T |
25854318 |
tccactacaggcctattctagtaagtttcaacgatgtgactcatatccgacaatgtcaaccatttatctggaggtgcaataccactgtcattttcgggag |
25854417 |
T |
|
| Q |
313 |
gatgcaatccattcaagatatagttaaaacg |
343 |
Q |
| |
|
||| ||||| ||| |||||||||||| |||| |
|
|
| T |
25854418 |
gatacaatcaatttaagatatagttataacg |
25854448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 25195753 - 25195888
Alignment:
| Q |
113 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac |
212 |
Q |
| |
|
||||| ||||||| ||||||||||| ||| | ||||| ||| |||| |||||| ||| |||||| ||||||| ||||||||||||||| | | | | |
|
|
| T |
25195753 |
gattactccaagacacatgatgtggattttcgggttaatcggatgcctacctctatttgggaaaaaagtctctgtaattccaatttcaaggctagttatc |
25195852 |
T |
|
| Q |
213 |
tccaccacaaccatattgtaataggtttcaatgatg |
248 |
Q |
| |
|
||||||||| | |||||||||| ||| |||||||| |
|
|
| T |
25195853 |
tccaccacaggcctattgtaataagttgcaatgatg |
25195888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 28421303 - 28421376
Alignment:
| Q |
105 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaa |
178 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||| ||| | ||||| ||| ||||| |||||||||| |||||| |
|
|
| T |
28421303 |
tgatttgggattaaaccaagacacatgatgtggattttcgggttaaccggaggcctacctctaattgggaaaaa |
28421376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 25614415 - 25614483
Alignment:
| Q |
283 |
caagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacgatcatcac |
351 |
Q |
| |
|
||||| ||||||||| ||||||| |||| ||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
25614415 |
caagtgcaataccaccactatttgtgggaggatgcaagtcatttaagatatagttataacgatcctcac |
25614483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 274
Target Start/End: Complemental strand, 17341415 - 17341246
Alignment:
| Q |
105 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
204 |
Q |
| |
|
||||||| |||||| |||||| |||||||| || || | ||||| ||| || ||||||||||||| | |||| || || ||||||||||||||||| |
|
|
| T |
17341415 |
tgatttgggattaacccaagacacatgatgcggtatttcgggttaatcggaggtctgcctctaattgggtaaaaagtatccgaaattccaatttcaaggc |
17341316 |
T |
|
| Q |
205 |
ttctcaactccaccacaaccatattgtaataggtttcaatgatgccacccatatctggcactgtaaacca |
274 |
Q |
| |
|
| | | ||||||||||| | |||||||||| ||| ||| |||| ||||||||| |||| ||| ||||| |
|
|
| T |
17341315 |
tagttatctccaccacaagcctattgtaataagttgcaacgatgtgacccatatccggcaatgtcaacca |
17341246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 14985627 - 14985673
Alignment:
| Q |
156 |
ggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaag |
202 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
14985627 |
ggcctacctctaattgggaaaaaagtctctgaaattccaatttcaag |
14985673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 19637537 - 19637445
Alignment:
| Q |
251 |
acccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacg |
343 |
Q |
| |
|
||||||||| |||| ||| ||| | |||||| |||| ||| |||||||| ||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
19637537 |
acccatatccggcaatgtcaactaattatctggaagttcaaaaccactaccattttttggaagatgcaatccattcaagatatagttataacg |
19637445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 19637627 - 19637586
Alignment:
| Q |
160 |
tgcctctaattgagaaaaatgtctctgaaattccaatttcaag |
202 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
19637627 |
tgcctctaattgggaaaaa-gtctctgaaattccaatttcaag |
19637586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University