View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275_high_4 (Length: 339)

Name: NF1275_high_4
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275_high_4
NF1275_high_4
[»] chr6 (14 HSPs)
chr6 (16-193)||(27703154-27703332)
chr6 (145-242)||(27423933-27424030)
chr6 (16-108)||(26852469-26852562)
chr6 (145-193)||(25486946-25486994)
chr6 (145-193)||(26146544-26146592)
chr6 (104-153)||(26852400-26852449)
chr6 (16-93)||(27661815-27661892)
chr6 (18-145)||(25487010-25487134)
chr6 (29-93)||(27079162-27079226)
chr6 (18-104)||(26059696-26059783)
chr6 (18-104)||(26079666-26079753)
chr6 (145-193)||(26059582-26059630)
chr6 (145-193)||(26079552-26079600)
chr6 (160-193)||(25583230-25583263)
[»] scaffold0003 (1 HSPs)
scaffold0003 (145-242)||(63333-63430)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 27703154 - 27703332
Alignment:
Q  16 atcttacattatgtctcatcacttgaaaaacttctccaactagaaacaaagaatttgtatttgactatatacagaaat-aatcaacatttgtaaacagca 114  Q
    |||||| || |||| |||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| |    
T  27703154 atcttaaatcatgtatcatcatttgaataacttctccaactagaaacaacgaatttgtaattgactatatacagaaattaatcaacatttgtaaacagaa 27703253  T
Q  115 aaccacaaaggtccaatgttaagattgagagttaactttgtgatggacctagaccaaggaatgtacccaacatctttct 193  Q
    || ||||||  ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||    
T  27703254 aatcacaaacctccaatgttgagattgagagttaactttatgatggagctagaccaaggaatgtaccccacatcattct 27703332  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 27423933 - 27424030
Alignment:
Q  145 gttaactttgtgatggacctagaccaaggaatgtacccaacatctttctattctcttctttcatcagttccttttgttgcacccacatctttctctga 242  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27423933 gttaactttatgatgaacctagaccaaggaatgtacccaacatctttgtattctcttctttcatcaattccttttgttgcacccacatctttctctga 27424030  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 26852562 - 26852469
Alignment:
Q  16 atcttacattatgtctcatcacttgaaaaacttctccaactagaaacaaagaatttgtatttgactatatacagaaa-taatcaacatttgtaa 108  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  26852562 atctcacatcatgtctcatcatttgaaaaacttctccaactagaaacaacgaatttgcaattgactatatacagaaattaatcaacatttgtaa 26852469  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 25486994 - 25486946
Alignment:
Q  145 gttaactttgtgatggacctagaccaaggaatgtacccaacatctttct 193  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  25486994 gttaactttatgatggacctagactaaggaatgtacccaacatctttct 25486946  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 26146592 - 26146544
Alignment:
Q  145 gttaactttgtgatggacctagaccaaggaatgtacccaacatctttct 193  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  26146592 gttaactttatgatggacctagactaaggaatgtacccaacatctttct 26146544  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 26852449 - 26852400
Alignment:
Q  104 tgtaaacagcaaaccacaaaggtccaatgttaagattgagagttaacttt 153  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  26852449 tgtaaacagcaaaccacaaacctccaatgttgagattgagagttaacttt 26852400  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 27661815 - 27661892
Alignment:
Q  16 atcttacattatgtctcatcacttgaaaaacttctccaactagaaacaaagaatttgtatttgactatatacagaaat 93  Q
    ||||||||| ||||||||| | || |  |||||||||| ||| |||||| ||||||||| ||||||||||||||||||    
T  27661815 atcttacatcatgtctcatgatttaagcaacttctccatctataaacaatgaatttgtaattgactatatacagaaat 27661892  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 25487134 - 25487010
Alignment:
Q  18 cttacattatgtctcatcacttgaaaaacttctccaactagaaacaaagaatttgtatttgactatatacagaaataatcaacatttgtaaacagcaaac 117  Q
    ||||||| |||||||||   || | |||||||||||||||||||||  |||||||||  |||||||||||||||||  ||||||||  || ||| ||||     
T  25487134 cttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactatatacagaaat-ttcaacatt--tatacaacaaag 25487038  T
Q  118 cacaaaggtccaatgttaagattgagag 145  Q
    ||||||  | ||||||| ||||||||||    
T  25487037 cacaaacctgcaatgttgagattgagag 25487010  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 27079226 - 27079162
Alignment:
Q  29 tctcatcacttgaaaaacttctccaactagaaacaaagaatttgtatttgactatatacagaaat 93  Q
    |||||||| || |||||||| |||||||||||||||  |||||||| |||| |||||||||||||    
T  27079226 tctcatcatttaaaaaacttgtccaactagaaacaacaaatttgtaattgaatatatacagaaat 27079162  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 26059783 - 26059696
Alignment:
Q  18 cttacattatgtctcatcacttgaaaaacttctccaactagaaacaaagaatttgtatttgactatatacagaaa-taatcaacattt 104  Q
    ||||||| |||||||||   || | |||||||||||||||||||||  |||||||||  |||||| ||||||||| ||||||||||||    
T  26059783 cttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacattt 26059696  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 26079753 - 26079666
Alignment:
Q  18 cttacattatgtctcatcacttgaaaaacttctccaactagaaacaaagaatttgtatttgactatatacagaaa-taatcaacattt 104  Q
    ||||||| |||||||||   || | |||||||||||||||||||||  |||||||||  |||||| ||||||||| ||||||||||||    
T  26079753 cttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacattt 26079666  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 26059630 - 26059582
Alignment:
Q  145 gttaactttgtgatggacctagaccaaggaatgtacccaacatctttct 193  Q
    ||||||||| ||||||||||| ||| |||||||||||| ||||||||||    
T  26059630 gttaactttatgatggacctaaaccgaggaatgtaccccacatctttct 26059582  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 26079600 - 26079552
Alignment:
Q  145 gttaactttgtgatggacctagaccaaggaatgtacccaacatctttct 193  Q
    ||||||||| ||||||||||| ||| |||||||||||| ||||||||||    
T  26079600 gttaactttatgatggacctaaaccgaggaatgtaccccacatctttct 26079552  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 25583263 - 25583230
Alignment:
Q  160 gacctagaccaaggaatgtacccaacatctttct 193  Q
    |||||| |||||||||||||||||||||||||||    
T  25583263 gacctaaaccaaggaatgtacccaacatctttct 25583230  T

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Target: scaffold0003 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 63430 - 63333
Alignment:
Q  145 gttaactttgtgatggacctagaccaaggaatgtacccaacatctttctattctcttctttcatcagttccttttgttgcacccacatctttctctga 242  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  63430 gttaactttatgatgaacctagaccaaggaatgtacccaacatctttgtattctcttctttcatcaattccttttgttgcacccacatctttctctga 63333  T

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