View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275_low_1 (Length: 1204)

Name: NF1275_low_1
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275_low_1
NF1275_low_1
[»] chr5 (7 HSPs)
chr5 (33-1126)||(32795331-32796419)
chr5 (187-896)||(19670138-19670849)
chr5 (892-1049)||(19667910-19668067)
chr5 (290-397)||(32796346-32796453)
chr5 (1053-1126)||(19670674-19670747)
chr5 (1059-1124)||(26896586-26896651)
chr5 (271-369)||(26896578-26896676)
[»] chr1 (10 HSPs)
chr1 (252-1049)||(22827041-22827845)
chr1 (252-377)||(22840959-22841084)
chr1 (1053-1126)||(22840973-22841046)
chr1 (252-352)||(22826646-22826746)
chr1 (1053-1126)||(22827079-22827152)
chr1 (195-307)||(20260903-20261014)
chr1 (1053-1115)||(22826684-22826746)
chr1 (187-237)||(26207059-26207109)
chr1 (1053-1122)||(24272755-24272824)
chr1 (271-359)||(24272755-24272843)
[»] chr6 (26 HSPs)
chr6 (271-1033)||(2921875-2922644)
chr6 (194-914)||(11678290-11679008)
chr6 (252-670)||(27340619-27341043)
chr6 (252-670)||(27401359-27401783)
chr6 (666-826)||(27413719-27413879)
chr6 (858-1049)||(27413893-27414085)
chr6 (272-377)||(13558009-13558114)
chr6 (252-374)||(2923172-2923295)
chr6 (252-353)||(13556018-13556119)
chr6 (271-362)||(16403529-16403619)
chr6 (198-359)||(11677130-11677290)
chr6 (1053-1126)||(13558027-13558100)
chr6 (1053-1116)||(13556056-13556119)
chr6 (1053-1126)||(2921894-2921967)
chr6 (1052-1125)||(16403529-16403601)
chr6 (1053-1126)||(2923210-2923284)
chr6 (1053-1126)||(11678844-11678917)
chr6 (268-335)||(22879999-22880066)
chr6 (271-365)||(16910129-16910223)
chr6 (1084-1126)||(27340686-27340728)
chr6 (1084-1126)||(27401426-27401468)
chr6 (349-396)||(11676986-11677033)
chr6 (268-335)||(22898114-22898181)
chr6 (271-381)||(14721695-14721804)
chr6 (1053-1131)||(16910148-16910226)
chr6 (1053-1122)||(11677130-11677199)
[»] scaffold0065 (1 HSPs)
scaffold0065 (187-431)||(34631-34873)
[»] scaffold0003 (2 HSPs)
scaffold0003 (666-826)||(79246-79406)
scaffold0003 (858-1049)||(79040-79232)
[»] chr7 (11 HSPs)
chr7 (252-385)||(11269939-11270072)
chr7 (252-377)||(7961767-7961892)
chr7 (1053-1126)||(7961781-7961854)
chr7 (187-297)||(11269753-11269862)
chr7 (1073-1126)||(1103162-1103215)
chr7 (1053-1126)||(11269961-11270034)
chr7 (252-307)||(36208004-36208059)
chr7 (310-380)||(1103145-1103215)
chr7 (197-297)||(11280342-11280442)
chr7 (1053-1130)||(1716681-1716758)
chr7 (343-392)||(40279382-40279430)
[»] chr3 (8 HSPs)
chr3 (194-385)||(25889606-25889789)
chr3 (252-381)||(30046404-30046534)
chr3 (1053-1124)||(31141410-31141481)
chr3 (252-363)||(37133785-37133896)
chr3 (340-392)||(25578998-25579051)
chr3 (1053-1126)||(25889628-25889701)
chr3 (288-361)||(31141410-31141483)
chr3 (1061-1115)||(30046435-30046489)
[»] chr4 (15 HSPs)
chr4 (252-365)||(27272573-27272687)
chr4 (197-385)||(50887366-50887545)
chr4 (252-381)||(53472556-53472683)
chr4 (258-381)||(53469673-53469796)
chr4 (1053-1126)||(27272575-27272648)
chr4 (1061-1126)||(53469713-53469778)
chr4 (1053-1121)||(10395972-10396040)
chr4 (271-358)||(10395972-10396059)
chr4 (271-363)||(32015167-32015259)
chr4 (271-381)||(29235155-29235265)
chr4 (1053-1123)||(29235173-29235244)
chr4 (1085-1130)||(13816943-13816988)
chr4 (1054-1126)||(53472595-53472665)
chr4 (1066-1124)||(21206356-21206414)
chr4 (1053-1127)||(32015166-32015240)
[»] chr2 (7 HSPs)
chr2 (252-381)||(8761186-8761316)
chr2 (274-381)||(37965516-37965624)
chr2 (284-372)||(10128496-10128584)
chr2 (1053-1124)||(10128507-10128578)
chr2 (1054-1126)||(8761225-8761298)
chr2 (1053-1126)||(37965532-37965606)
chr2 (316-377)||(15140798-15140859)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1053-1122)||(260217-260286)
scaffold0007 (286-359)||(260213-260286)
[»] chr8 (1 HSPs)
chr8 (271-327)||(42001908-42001964)


Alignment Details
Target: chr5 (Bit Score: 925; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 925; E-Value: 0
Query Start/End: Original strand, 33 - 1126
Target Start/End: Original strand, 32795331 - 32796419
Alignment:
Q  33 tcaagaacaatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaaaagggaataatct 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32795331 tcaagaacaatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaagagggaataatct 32795430  T
Q  133 gtcaaactatttgtgttgaaacatctgaactaaatgctagagttgagcataaactataaaaaa-cagaaagaaaggaattgtataatttaattaataatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32795431 gtcaaactatttgtgttgaaacatctgaactaaatgctagagttgagcataaactataaaaaaacagaaagaaaggaattgtataatttaattaataatt 32795530  T
Q  232 acatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaata 331  Q
    ||||||| ||||      | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  32795531 acatatt-acat------gatagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaata 32795623  T
Q  332 tgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattgatatcctcccgcacgttgcattgtctgaaagagagatg 431  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  32795624 tgactaagtctttgcatatttcttcatattatccgatgtgggacattttctcattattattgatatcctcccgcaagttgtattgtctgaaagagagatg 32795723  T
Q  432 caaattggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttg 531  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32795724 caacttggacagtaagtaatcgaacctaggacgaagcaggggtttggttagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttg 32795823  T
Q  532 ccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtgg-tagccccgaggt 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  32795824 ccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcatccgagagtgaaatacaggattagcgctaagatgggtagcaccgaggt 32795923  T
Q  631 tgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggcttt 730  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32795924 tgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggcttt 32796023  T
Q  731 atattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggtggag 830  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32796024 atattctgcttctttgaaagaccgagcaacaaaacgttgttttcaagagctccaagagatgggtgtgctgccaagatataacagataaccagtggtggag 32796123  T
Q  831 atataatcatccttgtcgccttctcatcgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgcc 930  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32796124 atataatcatccttgtcgccttctcactgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgttacaggaacccgcc 32796223  T
Q  931 aagtgtctgagcactcttttaagtgcagtccaatgcgccgttctgggattctgcatgaattgggcgagtttgtttgtgctgaggggaatgtctaggcgag 1030  Q
    |||  ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  32796224 aagcatctgagcactcttttgagtgcagtccaatgcgctgttctgggattctgcatgaattgggcgagtttgtttgtgctgagggcaatgtctgggcgag 32796323  T
Q  1031 taagattcaagtattggagatttattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32796324 taagattcaagttttggagatttatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattat 32796419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 187 - 896
Target Start/End: Complemental strand, 19670849 - 19670138
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 286  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||  || |||| |   |||||||||||||| ||| ||||||||||||||||    
T  19670849 tataagaaacagaaagaaaggaattgtataatgtaattaataattacagatc-acgtatactgaatagtagaggtaacgctagctatagcaaaacccact 19670751  T
Q  287 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 386  Q
    |||||||||| ||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  19670750 aactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatcttatgtgagacattttctcatt 19670651  T
Q  387 attattgatatcctcccgcacgttgcattgtctgaaagagagatgcaaattggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaata 486  Q
    |||||||||||||||||||| |||| || ||||||||||||| ||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||     
T  19670650 attattgatatcctcccgcaagttgtatggtctgaaagagagttgcaacttggacaataagtaatcgaacttaggatgaagcaggggtttggttagaatt 19670551  T
Q  487 tcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtcc 586  Q
    ||| |||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||    
T  19670550 tcaacaagttgatcatcggtagaaacaaatgatactcgaaacttgccatgttgaacattttctcagacaaaatgataggttaaggctatatgtttcatcc 19670451  T
Q  587 gagagtgaaatacaggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatag 685  Q
    |||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19670450 gagagtgaaatacaggattaacactaaggtgggtagcaccgaggttgtcacaatagatgactggattggctgttggagtgtggccaagttcagtgaatag 19670351  T
Q  686 ggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaa 785  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | || |||||||||||||| ||||||||||||||||||||||     
T  19670350 ggaaaggacccatagcagctcacttgtcgtgtcagccaaggctttatattttgcttttgtggaagatcgagcaacagaacgttgttttcgagagctccat 19670251  T
Q  786 gagatgggcgtgctgccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctca--tcgcatccgagtaggcgtggagattta 883  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |   ||||||||||||||||||||||||||    
T  19670250 gagatgggcgtgctgccaagatataacagataactagtggtggagatataatcatccttgtcgcctaccaagtccgcatccgagtaggcgtggagattta 19670151  T
Q  884 gtggggctgtcgt 896  Q
    |||||||||||||    
T  19670150 gtggggctgtcgt 19670138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 892 - 1049
Target Start/End: Complemental strand, 19668067 - 19667910
Alignment:
Q  892 gtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtgtctgagcactcttttaagtgcagtccaatgcgccgttctgggattctgcatgaatt 991  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  19668067 gtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtatctgagaactcttttgattgcggtccaatgcgccgttctgggattctgcatgaatt 19667968  T
Q  992 gggcgagtttgtttgtgctgaggggaatgtctaggcgagtaagattcaagtattggag 1049  Q
    ||||  ||||| |||||||||  | ||||| | ||||||||||| |||||||||||||    
T  19667967 gggcaggtttgcttgtgctgaatgaaatgtatgggcgagtaagactcaagtattggag 19667910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 32796346 - 32796453
Alignment:
Q  290 tattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattatt 389  Q
    |||| ||||||| |||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacattttctcattatt 32796445  T
Q  390 attgatat 397  Q
    ||||||||    
T  32796446 attgatat 32796453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Complemental strand, 19670747 - 19670674
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19670747 tattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattat 19670674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1059 - 1124
Target Start/End: Complemental strand, 26896651 - 26896586
Alignment:
Q  1059 tgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 1124  Q
    |||||| |||||| |||||||| |  |||||||||||| | |||||||||||||||||||| ||||    
T  26896651 tgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctatt 26896586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 26896676 - 26896578
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 369  Q
    ||||||||||| || ||||||||  |||||| |||||  ||||||||    |||||| ||||| | ||| |||||||||||||||| |||| |||||||    
T  26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctccaatg 26896578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 252 - 1049
Target Start/End: Original strand, 22827041 - 22827845
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||||   ||||||||| |||||||| ||||||| || ||||||||||||    
T  22827041 tagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatt 22827140  T
Q  352 tcttcatattatccaatgtgggacat-tttc---tcattattattgatatcctcccgcacgttgcattgtctgaaagagagatgcaaattggacagtaag 447  Q
    |||||||||||||| |||||||||||  |||   | ||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||| ||||    
T  22827141 tcttcatattatccgatgtgggacataattctaattattattattgatatcctcccgcaagttgtatggtctgaaagagagatgcaacttggacaataag 22827240  T
Q  448 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacatttt 547  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||    
T  22827241 taatcaaacctaggacgaagcaggggtttggttagaatatcagcaagttgatcatcggtagaaacaaaggatactcgaaacttgccattttgaacatttt 22827340  T
Q  548 ctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgac 646  Q
     || ||||||||| || | |||| ||||||||||| ||||||||||| ||||||||||||| ||||| | |||||| ||||||||||||||||| |||||    
T  22827341 atcagacaaaatggtaagttaagactatatgtttcatccgagagtgagatacaggattagcactaagttgggtagcaccgaggttgtcacaataaatgac 22827440  T
Q  647 tggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttg 746  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||    
T  22827441 tggattggttgttggagtgtggccaagttcattgaatagggaaaggacccatagcagcacacttgtcgtgtcagccaaggctttatattctgcttctatg 22827540  T
Q  747 aaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggtggagatataatcatccttgt 846  Q
     |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22827541 gaagagcgagcaacaaaacgttgtttttgacagctccaagagatgggcgtgctgccaagatataacagataaccagtggtggagatataatcatctttgt 22827640  T
Q  847 cgccttctca--tcgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtgtctgagcac 944  Q
    ||| | | ||   |||||| ||||||||||||||||||| ||| || ||||| || ||||||| |||||||||||||||||||||||||| | |||||||    
T  22827641 cgcttgcccagtccgcatcagagtaggcgtggagatttaatggagcggtcgttgaaatgaagatgcctttgtcacaggaacccgccaagtatttgagcac 22827740  T
Q  945 tcttttaagtgcagtccaatgcgccgttctgggattctgcatgaattgggcgagtttgtttgtgctgaggggaatgtctaggcgagtaagattcaagtat 1044  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| || ||||||| ||| ||||||| ||||||||    
T  22827741 tcttttgagtgcagtccaatgcgccgttctggggttttgcatgaattgcgcgagtttgtttgtgctgaaggcaatgtctgggcaagtaagactcaagtat 22827840  T
Q  1045 tggag 1049  Q
    |||||    
T  22827841 tggag 22827845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 22841084 - 22840959
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    ||||||| |||| | ||| ||||| ||||||||||||||||||||||||| |||||  ||||||||| ||||||||  |||||| |||||||||||||||    
T  22841084 tagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatt 22840985  T
Q  352 tcttcatattatccaatgtgggacat 377  Q
    |||||||||||||| |||||||||||    
T  22840984 tcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Complemental strand, 22841046 - 22840973
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  22841046 tattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatttcttcatattat 22840973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 252 - 352
Target Start/End: Original strand, 22826646 - 22826746
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    ||||||| |||| | ||| |||||||||| |||||||||||||||||||| |||||  ||||| ||| |||||||| ||||||| ||||||||||| |||    
T  22826646 tagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagatt 22826745  T
Q  352 t 352  Q
    |    
T  22826746 t 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Original strand, 22827079 - 22827152
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| ||||   |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  22827079 tattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatttcttcatattat 22827152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 20260903 - 20261014
Alignment:
Q  195 acagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattg 294  Q
    ||||||||||| | |||||||||| ||||||||||||||| | ||||||||| |   |||||||||||||| ||||||||||||||  || || ||||||    
T  20260903 acagaaagaaatggattgtataatgtaattaataattacaga-ttacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattg 20261001  T
Q  295 gtgcaagtaatac 307  Q
     |||||| |||||    
T  20261002 atgcaagaaatac 20261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1053 - 1115
Target Start/End: Original strand, 22826684 - 22826746
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatattt 1115  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||||| ||||    
T  22826684 tattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagattt 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 26207059 - 26207109
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatat 237  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  26207059 tataaagaatagaaagaaaggaattgtataatgtaattaataattacatat 26207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1053 - 1122
Target Start/End: Complemental strand, 24272824 - 24272755
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 1122  Q
    |||||||||||| |||||| ||||||||||| ||||| |||||    |||||||||||||||||||||||    
T  24272824 tattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 24272843 - 24272755
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 359  Q
    ||||| ||||| ||||||||||||||||||| |||||  ||||||||| | |||||  ||||    ||| |||||||||||||||||||    
T  24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 271 - 1033
Target Start/End: Original strand, 2921875 - 2922644
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 370  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| |||||||||||| |||| || ||| | ||||||||||||||||||||||| ||||    
T  2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattatccgatgt 2921974  T
Q  371 gggacat-tttctcattatta---ttgatatcctcccgcacgttgcattgtctgaaagagagatgcaaattggacagtaagtaatcgaacctaggacgaa 466  Q
    | |||||   ||| |||||||   |||||||||||| ||| |||| || ||||||||||||||||||| ||||||||||||||||||||||||| | |||    
T  2921975 gagacataaatctaattattattgttgatatcctcctgcaagttgtatggtctgaaagagagatgcaacttggacagtaagtaatcgaacctagaatgaa 2922074  T
Q  467 gcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggc 566  Q
    | |||||||||| ||||||||||  ||||||||||| | ||||||||||||||||| ||||| | |||| ||| |||||||||| |||||||||||||||    
T  2922075 gtaggggtttggttagaatatcaataagttgatcatcgttagaaacaaaggatactcgaaacattccattttgtacattttctcggacaaaatgataggc 2922174  T
Q  567 taaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgactggattggttgttggagtg 665  Q
    |||||||||||||||| ||| | |||||||||| |||||||| ||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| |    
T  2922175 taaggctatatgtttcatccaaaagtgaaatactggattagcactaaggtgggtagcactgaggttgtcacaatagatgactggattggctgttggaggg 2922274  T
Q  666 tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac 765  Q
    || ||||||||| |||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||| ||||||| || |||| | ||||||| |||    
T  2922275 tgaccaagttcattgaatagggaaaggacccatagaagctcactctccgtgttagccaaggctttatattttgcttctatggaagagcaagcaacagaac 2922374  T
Q  766 gttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctca-tc-gcatc 863  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | | || || ||||     
T  2922375 gttgttttcgagagctctaagagatgggtgtgctgccaagatataacagataactagtggtggagatataatcatccatgtcgcttgcccagtctgcatt 2922474  T
Q  864 cgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtgtctgagcactcttttaagtgcagtccaa 963  Q
     |||||||| |||||||||| |||||| |||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||    
T  2922475 tgagtaggcatggagatttaatggggcggtcgtcgaaatgaagacgcctttgtcataggaacctgccaagtatctgagcactcttttgagtgcagtccaa 2922574  T
Q  964 tgcgccgttctgggattctgcatgaattgggcgagtttgtttgtgctgaggggaatgtctaggcgagtaa 1033  Q
    ||||||||| |||| || ||||||||||||| ||||||||||||| ||| || |||||||||||||||||    
T  2922575 tgcgccgttatggggttttgcatgaattgggtgagtttgtttgtgatgaaggcaatgtctaggcgagtaa 2922644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 194 - 914
Target Start/End: Complemental strand, 11679008 - 11678290
Alignment:
Q  194 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 293  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||| ||| ||| |   |||||||||||| | ||  |||||||||| ||||||    ||    
T  11679008 aacagaaagaaaggaattgaataatgtaattgataaatacatatt-acaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----tt 11678914  T
Q  294 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattg 393  Q
    ||||  || |||||  |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11678913 ggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacattttctcattattattg 11678814  T
Q  394 atatcctcccgcacgttgcattgtctgaaagagagatgcaaattggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaatatcagcaa 493  Q
    ||||||||||||| |||| || || |||||||||||||||| ||||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||||    
T  11678813 atatcctcccgcaagttgtatggtttgaaagagagatgcaacttggacaataagtaatagaacctaggacaaaacagggatttggttagaatatcagcaa 11678714  T
Q  494 gttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtg 593  Q
    ||||||||| || ||||| |||||||| | |||||||||||||||| ||||||| || |||||||||||||||||||||||||| |||| |||||||||     
T  11678713 gttgatcatcggcagaaagaaaggatagtcgaaacttgccatgttgaacattttttcggacaaaatgataggctaaggctatatatttcatccgagagta 11678614  T
Q  594 aaatacaggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaagg 692  Q
    ||||||||||||| | ||||||| ||||||  |||||||| |||||||||||  |||| ||| ||||||||||||||||||||||||||||| |||||||    
T  11678613 aaatacaggattaacactaaggtaggtagcatcgaggttgccacaatagatgtttggaatggctgttggagtgtggccaagttcagtgaataaggaaagg 11678514  T
Q  693 acccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatgg 792  Q
    ||||||| ||||||||| | | ||||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  11678513 acccatatcagctcactcgtcatgtcagctaaggctttatactctgcttctgtggaagatcgagcaacaaaacgttgttttcgagagctccaagagatgg 11678414  T
Q  793 gcgtgctgccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctca-tc-gcatccgagtaggcgtggagatttagtggggc 890  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| | | || || ||||| ||||||||||||| ||||||||||||    
T  11678413 gtgtgctgccaagatataacagataactagtggtggagatataatcatccttaccgcatgcccagtctgcatctgagtaggcgtggatatttagtggggc 11678314  T
Q  891 tgtcgtcgagatgaagacgccttt 914  Q
    |||||| |||||||||| ||||||    
T  11678313 tgtcgttgagatgaagaagccttt 11678290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 252 - 670
Target Start/End: Original strand, 27340619 - 27341043
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27340619 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27340716  T
Q  352 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcacgttgcattgtctgaaagagagatgcaaattggacagtaag 447  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||  ||| || || ||| |||||||||||| ||||||||||||    
T  27340717 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgca-attgtatggtttgagagagagatgcaacttggacagtaag 27340815  T
Q  448 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacatttt 547  Q
    || |||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| | | |||||||    
T  27340816 tactcgaacctaggatgaagcaggggtttggttagaatatcagcaagttgatcatcgatagaaacaaaggatactcgaaacttgccatttcgaacatttt 27340915  T
Q  548 ctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtg-----gtagccccgaggttgtcacaataga 642  Q
    ||| || |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||     ||||| |||||||||||||||||||    
T  27340916 ctcggaaaaaatgataggctaaggctatatgtttcatccgagagtgaaatacagaattagcactaaggtgggtacgtagcaccgaggttgtcacaataga 27341015  T
Q  643 tgactggattggttgttggagtgtggcc 670  Q
    |||||||||||| || ||||||||||||    
T  27341016 tgactggattggatggtggagtgtggcc 27341043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 252 - 670
Target Start/End: Original strand, 27401359 - 27401783
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27401359 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27401456  T
Q  352 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcacgttgcattgtctgaaagagagatgcaaattggacagtaag 447  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||  ||| || || ||| |||||||||||| ||||||||||||    
T  27401457 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgca-attgtatggtttgagagagagatgcaacttggacagtaag 27401555  T
Q  448 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacatttt 547  Q
    || |||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| | | |||||||    
T  27401556 tactcgaacctaggatgaagcaggggtttggttagaatatcagcaagttgatcatcgatagaaacaaaggatactcgaaacttgccatttcgaacatttt 27401655  T
Q  548 ctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtg-----gtagccccgaggttgtcacaataga 642  Q
    ||| || |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||     ||||| |||||||||||||||||||    
T  27401656 ctcggaaaaaatgataggctaaggctatatgtttcatccgagagtgaaatacagaattagcactaaggtgggtacgtagcaccgaggttgtcacaataga 27401755  T
Q  643 tgactggattggttgttggagtgtggcc 670  Q
    |||||||||||| || ||||||||||||    
T  27401756 tgactggattggatggtggagtgtggcc 27401783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 666 - 826
Target Start/End: Original strand, 27413719 - 27413879
Alignment:
Q  666 tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac 765  Q
    ||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |  |||| ||||||||| |||    
T  27413719 tggccaaatttagtgaatagggaaaggacccataacagctcactcgccgtgtcagccaaggctttatattctgcttctgtagaagagcgagcaacagaac 27413818  T
Q  766 gttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggt 826  Q
     ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27413819 attgttttagagagctccaagagatgggcgtgctgccaagatataatagataaccagtggt 27413879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 858 - 1049
Target Start/End: Original strand, 27413893 - 27414085
Alignment:
Q  858 cgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgccaa-gtgtctgagcactcttttaagtgc 956  Q
    |||||| |||||||| |||||||||| |||| | |||||||| |||||||| ||||||||||||||||||||||| || |  |||||||||||| |||||    
T  27413893 cgcatctgagtaggcatggagatttaatgggtcggtcgtcgaaatgaagacacctttgtcacaggaacccgccaaagtataggagcactcttttgagtgc 27413992  T
Q  957 agtccaatgcgccgttctgggattctgcatgaattgggcgagtttgtttgtgctgaggggaatgtctaggcgagtaagattcaagtattggag 1049  Q
    |||||||| | |||||||||  || ||||||||||||||||||||||||||| ||| || |||||||||| |||||||  |||||| ||||||    
T  27413993 agtccaatacaccgttctggagttttgcatgaattgggcgagtttgtttgtgttgaaggcaatgtctaggagagtaaggctcaagtgttggag 27414085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 13558009 - 13558114
Alignment:
Q  272 atagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtg 371  Q
    ||||||||| |||||||||||||||||| | |||||  ||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtg 13558108  T
Q  372 ggacat 377  Q
    ||||||    
T  13558109 ggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 252 - 374
Target Start/End: Original strand, 2923172 - 2923295
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcc-tttgcatat 350  Q
    ||||||| ||||  |||| |||| ||| |||||||||||||| ||||||| | |||  |||||||||||||||||| ||||||| ||||| |||||||||    
T  2923172 tagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatat 2923271  T
Q  351 ttcttcatattatccaatgtggga 374  Q
    ||||||||||||||| ||||||||    
T  2923272 ttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 252 - 353
Target Start/End: Original strand, 13556018 - 13556119
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    ||||||| |||| | ||| |||||||||||||| |||||||||||||||| |||||  ||||||||| |||||||| ||||||| |||||||||||||||    
T  13556018 tagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatt 13556117  T
Q  352 tc 353  Q
    ||    
T  13556118 tc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 16403619 - 16403529
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatta 362  Q
    |||||||||| ||||||| ||||||||||| |||||   |||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  16403619 tatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatta 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 198 - 359
Target Start/End: Complemental strand, 11677290 - 11677130
Alignment:
Q  198 gaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtg 297  Q
    ||||||||||||||| ||||| | |||||||| ||||   ||||| |||  |  |||||||||||| | ||| ||||| ||||||| |||||||||||||    
T  11677290 gaaagaaaggaattgaataatgtcattaataaatacaagattacaaatacgaa-tagtagaggtaatgctagctataggaaaacccgctaactattggtg 11677192  T
Q  298 caagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 359  Q
      || |||||  |||||||||| ||||||| ||||||  || ||||||||||||||||||||    
T  11677191 ttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Original strand, 13558027 - 13558100
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||| | |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  13558027 tattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattat 13558100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1053 - 1116
Target Start/End: Original strand, 13556056 - 13556119
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttc 1116  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  13556056 tattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Original strand, 2921894 - 2921967
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| |||||| ||||| ||| ||||||||||||| || ||||| |||||||||||||||||||||    
T  2921894 tattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattat 2921967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1052 - 1125
Target Start/End: Complemental strand, 16403601 - 16403529
Alignment:
Q  1052 ttattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatta 1125  Q
    |||||||||||| |||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  16403601 ttattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatta 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Original strand, 2923210 - 2923284
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtc-tttgcatatttcttcatattat 1126  Q
    |||| ||||||| | |||| ||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||    
T  2923210 tattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatatttcttcatattat 2923284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Complemental strand, 11678917 - 11678844
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    ||||||||  || |||||| |||||||||  ||||||||| ||||| ||| |||||||||||||||||||||||    
T  11678917 tattggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattat 11678844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 22879999 - 22880066
Alignment:
Q  268 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 335  Q
    ||||||||||||||||||||| |||||||||||| ||||   |||||||| || |||||| |||||||    
T  22879999 agttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgac 22880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 16910129 - 16910223
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatcc 365  Q
    ||||||||||| ||| ||||||||| ||||  |||||  |||||||| ||||||||| |||   | ||| ||||||||||| |||||||||||||    
T  16910129 tatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatcc 16910223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1084 - 1126
Target Start/End: Original strand, 27340686 - 27340728
Alignment:
Q  1084 ttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  27340686 ttttatttatatgaccaagcctttgcatatttcttcatattat 27340728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1084 - 1126
Target Start/End: Original strand, 27401426 - 27401468
Alignment:
Q  1084 ttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  27401426 ttttatttatatgaccaagcctttgcatatttcttcatattat 27401468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 11677033 - 11676986
Alignment:
Q  349 atttcttcatattatccaatgtgggacattttctcattattattgata 396  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  11677033 atttcttcatattatccgatgtgagacattttcaaattattattgata 11676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 22898114 - 22898181
Alignment:
Q  268 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 335  Q
    ||||||||||||||||||||| |||||||||||| ||||   ||||| || || |||||| |||||||    
T  22898114 agttatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgac 22898181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 381
Target Start/End: Complemental strand, 14721804 - 14721695
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 370  Q
    |||| ||||||||| ||||||||| |||||| |||||  | | ||||| |||||||| ||| | | || | ||||||||||||||  |||| ||| ||||    
T  14721804 tataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttataggccaaatc-tttgcatatttctttctattctccgatgt 14721706  T
Q  371 gggacattttc 381  Q
    |||||||||||    
T  14721705 gggacattttc 14721695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1053 - 1131
Target Start/End: Original strand, 16910148 - 16910226
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattattcgac 1131  Q
    |||||| ||||  |||||| ||||||||  ||||||||||||   | ||||||||||||||| ||||||||||| ||||    
T  16910148 tattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatccgac 16910226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1053 - 1122
Target Start/End: Complemental strand, 11677199 - 11677130
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 1122  Q
    ||||||||  || |||||| |||||||||  ||||||||||||||  ||  |||||||||||||||||||    
T  11677199 tattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 114; Significance: 3e-57; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 187 - 431
Target Start/End: Complemental strand, 34873 - 34631
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 286  Q
    ||||| ||||||||||||| ||||||||||||  |||| |||||||||  |||||| ||| ||  ||||||| ||||  |||| ||||||||||||||||    
T  34873 tataagaaacagaaagaaatgaattgtataatgaaattgataattacaagtttacaaatactaaatagtagaagtaatattagctatagcaaaacccact 34774  T
Q  287 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 386  Q
    |||||||||||| | ||||||  |||||  ||||||||||| |||||||||||| ||| ||||||| || |||||||| |||||| ||||||||||||||    
T  34773 aactattggtgctaataatactaacaca--agacttttatttatatgactaagcattttcatatttttttatattatctaatgtgagacattttctcatt 34676  T
Q  387 attattgatatcctcccgcacgttgcattgtctgaaagagagatg 431  Q
    |||||||||||||||||||| |||| || ||||||||||| ||||    
T  34675 attattgatatcctcccgcaagttgtatggtctgaaagagtgatg 34631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 113; Significance: 1e-56; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 666 - 826
Target Start/End: Complemental strand, 79406 - 79246
Alignment:
Q  666 tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac 765  Q
    ||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |  |||| ||||||||| |||    
T  79406 tggccaaatttagtgaatagggaaaggacccataacagctcactcgccgtgtcagccaaggctttatattctgcttctgtagaagagcgagcaacagaac 79307  T
Q  766 gttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggt 826  Q
     ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  79306 attgttttagagagctccaagagatgggcgtgctgccaagatataatagataaccagtggt 79246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 858 - 1049
Target Start/End: Complemental strand, 79232 - 79040
Alignment:
Q  858 cgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgccaa-gtgtctgagcactcttttaagtgc 956  Q
    |||||| |||||||| |||||||||| |||| | |||||||| |||||||| ||||||||||||||||||||||| || |  |||||||||||| |||||    
T  79232 cgcatctgagtaggcatggagatttaatgggtcggtcgtcgaaatgaagacacctttgtcacaggaacccgccaaagtataggagcactcttttgagtgc 79133  T
Q  957 agtccaatgcgccgttctgggattctgcatgaattgggcgagtttgtttgtgctgaggggaatgtctaggcgagtaagattcaagtattggag 1049  Q
    |||||||| | |||||||||  || ||||||||||||||||||||||||||| ||| || |||||||||| |||||||  |||||| ||||||    
T  79132 agtccaatacaccgttctggagttttgcatgaattgggcgagtttgtttgtgttgaaggcaatgtctaggagagtaaggctcaagtgttggag 79040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 4e-38; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 252 - 385
Target Start/End: Complemental strand, 11270072 - 11269939
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||| ||||||| || | |||  |||||    
T  11270072 tagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatt 11269973  T
Q  352 tcttcatattatccaatgtgggacattttctcat 385  Q
    |||||||||||||| |||||||||||||||||||    
T  11269972 tcttcatattatccgatgtgggacattttctcat 11269939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 7961892 - 7961767
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| ||||||| || ||||||||||||    
T  7961892 tagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatt 7961793  T
Q  352 tcttcatattatccaatgtgggacat 377  Q
    |||||||||||| | |||||||||||    
T  7961792 tcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Complemental strand, 7961854 - 7961781
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  7961854 tattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatttcttcatattat 7961781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 11269753 - 11269862
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 286  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||||| | ||||| ||| ||  |||||||||||||| ||| |||||||||||  |||    
T  11269753 tataaaaaatagaaagaaatgaattgtataatgtaattgataattacaga-ttacagatactaactagtagaggtaacgctagctatagcaaaacttact 11269851  T
Q  287 aactattggtg 297  Q
    |||||||||||    
T  11269852 aactattggtg 11269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1073 - 1126
Target Start/End: Complemental strand, 1103215 - 1103162
Alignment:
Q  1073 acacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatattat 1103162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Complemental strand, 11270034 - 11269961
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||   |||  |||||||||||||||||    
T  11270034 tattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatttcttcatattat 11269961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 36208059 - 36208004
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaatac 307  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  36208059 tagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatac 36208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 1103215 - 1103145
Alignment:
Q  310 acacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacatttt 380  Q
    ||||||||| |||||||| ||||| | ||| |||| |||||||||||||||||||| ||||||||| ||||    
T  1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttt 1103145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 11280442 - 11280342
Alignment:
Q  197 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 296  Q
    |||||||||| ||||||||||| ||||| ||||||||| |||     ||| |   |||||||||||||| ||| |||||||||||| |||||||||||||    
T  11280442 agaaagaaagaaattgtataatgtaattgataattacagattacgggatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggt 11280343  T
Q  297 g 297  Q
    |    
T  11280342 g 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1053 - 1130
Target Start/End: Original strand, 1716681 - 1716758
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattattcga 1130  Q
    ||||| |||||| |||| | ||||||||| | ||||||||||||   |||||||| ||||||| |||||||| |||||    
T  1716681 tattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatattcttcga 1716758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 40279430 - 40279382
Alignment:
Q  343 ttgcatatttcttcatattatccaatgtgggacattttctcattattatt 392  Q
    |||| |||||||||||| |||||||||||| ||||||||| |||||||||    
T  40279430 ttgcttatttcttcataatatccaatgtggaacattttct-attattatt 40279382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 194 - 385
Target Start/End: Complemental strand, 25889789 - 25889606
Alignment:
Q  194 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 293  Q
    ||||||||||||||||||||||||| ||||| ||||        ||||| | | ||  || ||||||||  | ||| |||||||||||||||||||||||    
T  25889789 aacagaaagaaaggaattgtataatgtaattgataa--------ttacaaagactaaataatagaggtactgctagctatagcaaaacccactaactatt 25889698  T
Q  294 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 385  Q
    |||||||| |||||  ||| |||||||||||||| ||||||| || ||||||||||  ||||||| |||||| |||||||||||||||||||    
T  25889697 ggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatgtgggacattttctcat 25889606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 381
Target Start/End: Complemental strand, 30046534 - 30046404
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcata-- 349  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || |||| |||||  ||||||||  |||||||| |||||   ||| |||||||||      
T  30046534 tagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatatt 30046436  T
Q  350 tttcttcatattatccaatgtgggacattttc 381  Q
    ||| |||||||||||| || || |||||||||    
T  30046435 ttttttcatattatccgatatgagacattttc 30046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1053 - 1124
Target Start/End: Complemental strand, 31141481 - 31141410
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 1124  Q
    |||||||| ||| |||||| |||| |||| |||||||||||||| |||| ||||||||||||||||| ||||    
T  31141481 tattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 31141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 37133785 - 37133896
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    |||||||| |||| |||||||||||||||  |||||||||||| || ||| |||||  | |||||||||||||||| ||| | ||||  ||| | |||||    
T  37133785 tagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatatt 37133884  T
Q  352 tcttcatattat 363  Q
    | ||||||||||    
T  37133885 ttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 25578998 - 25579051
Alignment:
Q  340 cctttgcatatttcttcatattatccaatgtgggacatt-ttctcattattatt 392  Q
    |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||    
T  25578998 cctttgcatatttcttcatattatccgatgtgagacattattctaattattatt 25579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Complemental strand, 25889701 - 25889628
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| |||||| ||| ||||| |||||||||||||||| ||  |||||||||  ||||||| ||||    
T  25889701 tattggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttat 25889628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 31141483 - 31141410
Alignment:
Q  288 actattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 361  Q
    |||||||||| ||| |||||  |||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||    
T  31141483 actattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 31141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1061 - 1115
Target Start/End: Complemental strand, 30046489 - 30046435
Alignment:
Q  1061 caagtaatactgacacacaaggcttttatttatatgactaagtctttgcatattt 1115  Q
    |||| |||||| |||||||| |||||||||||||||   ||||||||||||||||    
T  30046489 caagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatattt 30046435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 4e-29; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 252 - 365
Target Start/End: Complemental strand, 27272687 - 27272573
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaa-cccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatat 350  Q
    ||||||| |||| | ||| |||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||| ||||||| || |||||||||||    
T  27272687 tagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatat 27272588  T
Q  351 ttcttcatattatcc 365  Q
    |||||||||||||||    
T  27272587 ttcttcatattatcc 27272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 197 - 385
Target Start/End: Original strand, 50887366 - 50887545
Alignment:
Q  197 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 296  Q
    |||||||||||||||||||||| ||||| ||||||||||||        | ||  ||||||||||||   ||| ||||||||||||||||||||||| ||    
T  50887366 agaaagaaaggaattgtataatgtaattgataattacatat--------actaaatagtagaggtaatactagctatagcaaaacccactaactattagt 50887457  T
Q  297 gcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 385  Q
    | ||| || ||| || |||||||| |||||| ||||| | |||||||||||||||| |||||||||| | ||| |||||||||||||||    
T  50887458 gtaagcaaaaccaacgcacaagacatttatttatatggccaagcctttgcatattt-ttcatattattcgatgcgggacattttctcat 50887545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 252 - 381
Target Start/End: Original strand, 53472556 - 53472683
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 351  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||| | |||||  |||||||| ||||||||| ||||| | ||| |||||||||||    
T  53472556 tagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttttatttatatggc-aagtctttgcatatt 53472653  T
Q  352 tcttcatattatccaatgtgggacattttc 381  Q
    ||||| |||||||| |||||| ||||||||    
T  53472654 tcttcgtattatccgatgtggaacattttc 53472683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 258 - 381
Target Start/End: Original strand, 53469673 - 53469796
Alignment:
Q  258 aggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttca 357  Q
    ||||||| || | ||||| |||| ||||||||||||| | |||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  53469673 aggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttca 53469772  T
Q  358 tattatccaatgtgggacattttc 381  Q
    |||||||  |||| | ||||||||    
T  53469773 tattatctgatgtagaacattttc 53469796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Complemental strand, 27272648 - 27272575
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  27272648 tattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatatttcttcatattat 27272575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1061 - 1126
Target Start/End: Original strand, 53469713 - 53469778
Alignment:
Q  1061 caagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  53469713 caagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcatattat 53469778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1053 - 1121
Target Start/End: Complemental strand, 10396040 - 10395972
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcat 1121  Q
    ||||| |||||| |||||| |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  10396040 tattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcat 10395972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 10396059 - 10395972
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcat 358  Q
    ||||||| |||||||||||||||| |||||| |||||  ||||||||| |||||||| ||||| |  || ||||||||||||||||||    
T  10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcat 10395972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 32015259 - 32015167
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattat 363  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| || |||||| || |  | ||| |||||||||| ||||| ||||||    
T  32015259 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattat 32015167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 381
Target Start/End: Original strand, 29235155 - 29235265
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaat-accgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 369  Q
    |||||||||||| || ||||||||||||||| ||| ||  ||||||||| | |||||| ||||| | ||| |||||||||||| ||||||| |||| |||    
T  29235155 tatagcaaaacc-acgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatataatccgatg 29235253  T
Q  370 tgggacattttc 381  Q
    ||||| ||||||    
T  29235254 tgggatattttc 29235265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1053 - 1123
Target Start/End: Original strand, 29235173 - 29235244
Alignment:
Q  1053 tattggtgcaagtaat-actgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatat 1123  Q
    |||||||||||| ||| ||| ||||||||||| |||||||||||| | |||||||||||||||| |||||||    
T  29235173 tattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatat 29235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1085 - 1130
Target Start/End: Complemental strand, 13816988 - 13816943
Alignment:
Q  1085 tttatttatatgactaagtctttgcatatttcttcatattattcga 1130  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||    
T  13816988 tttatttatatgaccaagtcttcgcatatttcttcatattcttcga 13816943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1054 - 1126
Target Start/End: Original strand, 53472595 - 53472665
Alignment:
Q  1054 attggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    ||||||||| | |||||| ||||||||  |||||||||||||| | |||||||||||||||||||| ||||||    
T  53472595 attggtgcatgaaatactaacacacaaa-cttttatttatatggc-aagtctttgcatatttcttcgtattat 53472665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1066 - 1124
Target Start/End: Complemental strand, 21206414 - 21206356
Alignment:
Q  1066 aatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 1124  Q
    |||||| | ||||| |||||||||||||||||| ||| ||||| |||||||||| ||||    
T  21206414 aatactaatacacatggcttttatttatatgaccaagcctttgtatatttcttcgtatt 21206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1053 - 1127
Target Start/End: Complemental strand, 32015240 - 32015166
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattatt 1127  Q
    |||||||||||| |||||| ||||||||  | ||||||||| |  | |||||||||||||| ||||| |||||||    
T  32015240 tattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattatt 32015166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 252 - 381
Target Start/End: Original strand, 8761186 - 8761316
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatga-ctaagcctttgcatat 350  Q
    |||||||| ||| | ||| |||| ||||| |||||||| ||||||||||| |||||  |||||||||||||||||| |||||| | |||  |||||||||    
T  8761186 tagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatat 8761285  T
Q  351 ttcttcatattatccaatgtgggacattttc 381  Q
    ||||||||||||||  |||||||||||||||    
T  8761286 ttcttcatattatctgatgtgggacattttc 8761316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 37965516 - 37965624
Alignment:
Q  274 agcaaaacccactaactattggtgcaagtaataccgacacacaa-gacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 372  Q
    ||||||||||| |||||||||||||||| |||||  |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||||||| |||||     
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtga 37965615  T
Q  373 gacattttc 381  Q
    |||||||||    
T  37965616 gacattttc 37965624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 10128584 - 10128496
Alignment:
Q  284 actaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 372  Q
    |||||||||||||||||| |||||  |||||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| ||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtgg 10128496  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1053 - 1124
Target Start/End: Complemental strand, 10128578 - 10128507
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 1124  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  10128578 tattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatatt 10128507  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1054 - 1126
Target Start/End: Original strand, 8761225 - 8761298
Alignment:
Q  1054 attggtgcaagtaatactgacacacaaggcttttatttatatga-ctaagtctttgcatatttcttcatattat 1126  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||    
T  8761225 attggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatattat 8761298  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1053 - 1126
Target Start/End: Original strand, 37965532 - 37965606
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaagg-cttttatttatatgactaagtctttgcatatttcttcatattat 1126  Q
    |||||||||||| |||||| |||||||| | |||||||||||||  | |||||||||||||||||||||||||||    
T  37965532 tattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattat 37965606  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 15140859 - 15140798
Alignment:
Q  316 aagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacat 377  Q
    |||||||||||| ||||||| ||  |||| ||||||||||||| ||| || |||||||||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacat 15140798  T

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Target: scaffold0007 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1053 - 1122
Target Start/End: Original strand, 260217 - 260286
Alignment:
Q  1053 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 1122  Q
    |||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  260217 tattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

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Target: scaffold0007; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 260213 - 260286
Alignment:
Q  286 taactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 359  Q
    |||||||||||||||| |||||  |||||||||  ||||||| || |||||||| |||||||||||||||||||    
T  260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

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Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 42001964 - 42001908
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttatt 327  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  42001964 tatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatt 42001908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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