View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_10 (Length: 434)
Name: NF1275_low_10
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 3598008 - 3598376
Alignment:
| Q |
13 |
aatattgagattttctaattgacaccagtcctcgccattaaccaactaattcttttatgatttctaccccttccttggaatgaggaagagtgacagcaat |
112 |
Q |
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| T |
3598008 |
aatattgagattttctaattgacaccagtcctcgccattaaccaactaattcttttatgatttctaccccttccttggaatgaggaagagtgacagcaat |
3598107 |
T |
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| Q |
113 |
aaaacgttttcatttgtagttatgatcaagaattaatttgaatgatccttgcttttccaggtactaaagttaaagataaagggaatttgattagtaaatc |
212 |
Q |
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| T |
3598108 |
aaaacgttttagtttgtagttatgatcaacaattaatttgaatgatccttgcttttccaggtactgaagttaaagataaagggaatttgattagtaaatc |
3598207 |
T |
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| Q |
213 |
atttctgtacctggaattttggattcttccgcaatgggtgcaggtgaagatcttgcaaacaatgcagctagtgttgccgagaatcctgtaaaccaggcca |
312 |
Q |
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| T |
3598208 |
atttctgtacctggaattttggattcttccgcaatgggtgcaggtgaagatcttgcaaacaatgcagctagtgttgccgagaatcctgtaaaccaggcca |
3598307 |
T |
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| Q |
313 |
ctcctactacagaaaatcctataagcaatcaagcaggtggggcagaaaatcctgtaaatgttgcaaaag |
381 |
Q |
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| T |
3598308 |
ctcctactacagaaaatcctataagcaatcaagcaggtggggcagaaaatcctgtaaatgttgcaaaag |
3598376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 7158346 - 7158309
Alignment:
| Q |
392 |
tgccccaccttgttgatgtccatgtggaggcactgtgt |
429 |
Q |
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| T |
7158346 |
tgccccaccttgttgatgtccatgtggaggcactgtgt |
7158309 |
T |
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