View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_12 (Length: 395)
Name: NF1275_low_12
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 35851150 - 35850794
Alignment:
| Q |
11 |
cagagaagaaaagagaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatc |
110 |
Q |
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| T |
35851150 |
cagagaagaaaagagaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatc |
35851051 |
T |
|
| Q |
111 |
aaatcggaaaagttttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattct |
210 |
Q |
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| T |
35851050 |
aaatcggaaaagttttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattct |
35850951 |
T |
|
| Q |
211 |
cattgaggattgcgattttgacgatgatttgattcgacggaagaatgaattggatcaatcgttgttgaataagattattgaagaatcgagtgaattgaat |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850950 |
cattgaggattgcgattttgacgacgatttgattcgacggaagaatgaattggatcaatcgttgttgaataagattattgaagaatcgagtgaattgaat |
35850851 |
T |
|
| Q |
311 |
gtggaagatcaagaggaatcacaagatgtgatggacgatgattctagggattcctgt |
367 |
Q |
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| T |
35850850 |
gtggaagatcaagaggaatcacaagatgtgatggacgatgattctagggattcctgt |
35850794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 35841528 - 35841182
Alignment:
| Q |
13 |
gagaagaaaagagaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaa |
112 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||| |
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| T |
35841528 |
gagaagaaaagggaaagaaactgtaaccgttgaattgaagaagccgattgtattgattggacgatgtgttttgaaagagttttcagaaaccgtt---caa |
35841432 |
T |
|
| Q |
113 |
atcggaaaagttttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctca |
212 |
Q |
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|||||||||||| ||||||| |||||||||| |||||||| || || |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35841431 |
atcggaaaagttatgagttatgaaatcggtttttacagagtggagtatgagaacggtgtttttgaggatttggatagtagcgctattcgtagaattctca |
35841332 |
T |
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| Q |
213 |
ttgaggattgcgattttgacgatgatttgattcgacggaagaatgaattggatcaatcgttgttgaataagattattgaagaatcgagtgaattgaatgt |
312 |
Q |
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|||||||||||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
35841331 |
ttgaggattgcgatttcgacgatgatttgattcgaagaaagaatgaattggaacaatcgttgttgaataagattattgaagaatctagagaattgaatgc |
35841232 |
T |
|
| Q |
313 |
ggaagatcaagaggaatcacaagatgtgatggacgatgattctagggatt |
362 |
Q |
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||||||||||||||| |||| |||||| |||||||||||||||||||||| |
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| T |
35841231 |
ggaagatcaagaggattcacgagatgttatggacgatgattctagggatt |
35841182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 13313651 - 13313413
Alignment:
| Q |
9 |
agcagagaagaaaagagaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttga |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13313651 |
agcagagaagaaaagagaaagaaactggaaccgttgaaatgaataagccgattgtattgattggacgatacgttttgaaagagttttcagaattcgttgt |
13313552 |
T |
|
| Q |
109 |
tcaaatcggaaaagttttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaatt |
208 |
Q |
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|||||| ||||||||| ||||| | ||||||||||||||||||||||| | |||||| ||| ||||||| | |||||||||| || ||| ||||||||| |
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| T |
13313551 |
tcaaattggaaaagttgtgagtcataaaatcggtttatacagagtcgagtttgagaacagtgtttttgagaaattggatagtattgttatccgtagaatt |
13313452 |
T |
|
| Q |
209 |
ctcattgaggattgcgattttgacgatgatttgattcga |
247 |
Q |
| |
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||||| |||||||| |||||||| |||||||||||||| |
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| T |
13313451 |
ctcatcaaggattgcaattttgactatgatttgattcga |
13313413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 13314048 - 13314307
Alignment:
| Q |
14 |
agaagaaaagagaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||| |||| |
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| T |
13314048 |
agaagaaaagagaaagaaactgtaaccgttgaaatgaagaagccgattgtgttgattggacgatagattttgaaagagttttcaaaaagcgttgtccaaa |
13314147 |
T |
|
| Q |
114 |
tcggaaaagttttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcat |
213 |
Q |
| |
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||| ||||||||||| ||| ||||| ||||||||||||||||| | ||||| | || ||||||||| |||||||||| || ||||| || ||||||||| |
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| T |
13314148 |
tcgaaaaagttttgatttataaaattggtttatacagagtcgagtttgagaatgatgtttttgaggaattggatagtaatgttattcctataattctcat |
13314247 |
T |
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| Q |
214 |
tgaggattgcgattttgacgatgatttgattcgacggaagaatgaattggatcaatcgtt |
273 |
Q |
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||||||||| ||||||| | ||||| |||||||| ||||||||||||||||||||||| |
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| T |
13314248 |
cgaggattgcaattttgattaagatttaattcgacgaaagaatgaattggatcaatcgtt |
13314307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 13301051 - 13300924
Alignment:
| Q |
59 |
attgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacagagtcgact |
158 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| |||||||| ||||||||||||||| |||||||| |||||| | |
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| T |
13301051 |
attgtattgattggacgatacgttttgaaagagtttt-agaaagcattgttcaaatcagaaaagttatgagttacaaaatcgatttatacaaagtcgagt |
13300953 |
T |
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| Q |
159 |
acgagaacggtgattttgaggatttggat |
187 |
Q |
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|||||||||| ||||||||| |||||| |
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| T |
13300952 |
ttgagaacggtgtttttgaggaattggat |
13300924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 13305578 - 13305675
Alignment:
| Q |
54 |
agcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacaga |
151 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||| |||||||| ||||||| |||||||||||| ||||| |
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| T |
13305578 |
agccgattgtattgattggccgatatgttttgaaagagttttcagaaagcgttgttcaaatcagaaaagttgtgagttataaaatcggtttacacaga |
13305675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 228
Target Start/End: Complemental strand, 13305536 - 13305377
Alignment:
| Q |
59 |
attgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacagagtcgact |
158 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| || ||||||| ||||| ||||||| ||||| || | |
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| T |
13305536 |
attgtattggttggacgatgtgttttgaaagagttttcagaaag------tcaaatcggaaaaattatgagttataaaattggtttatgcagag--gagt |
13305445 |
T |
|
| Q |
159 |
acgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgcgattt |
228 |
Q |
| |
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|||||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
13305444 |
ttgagaacggtgtttttgaggaaattgatagtagtgctattcgtagaattctca--gaggattgcaattt |
13305377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 13305673 - 13305739
Alignment:
| Q |
162 |
agaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgcgattt |
228 |
Q |
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||||||||| ||||||||| ||||||||||||| ||||||| |||| |||| ||| ||||| |||| |
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| T |
13305673 |
agaacggtgtttttgaggaattggatagtagtgttattcgtcaaattatcatcgagtattgcaattt |
13305739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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