View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_14 (Length: 377)
Name: NF1275_low_14
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 91 - 377
Target Start/End: Complemental strand, 3957838 - 3957551
Alignment:
| Q |
91 |
gaggaatgatgtatcatttctannnnnnnc-gtgtgtgtattgcaggtttttgatgaaacattacgcatcaccagtgtctttgcaacttttcgagaggca |
189 |
Q |
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| T |
3957838 |
gaggaatgatgtatcatttctatttttttccgtgtgtgtattgcaggtttttgatgaaacattacgcatcaccagtgtctttgcaacttttcgagaggca |
3957739 |
T |
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| Q |
190 |
acaactgatgcaaacatcaatggttttgttatattccttgtactttgtttctagctgcttccgattattaaaaatgaataatgaatttaatgtgtctttt |
289 |
Q |
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| T |
3957738 |
acaactgatgcaaacatcaatggttttgttatattccttgtactttgtttctagctgcttccgattattaaaaatgaataatgaatttaatgtgtctttt |
3957639 |
T |
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| Q |
290 |
gctcaataactttaggttatctcattccaaagggatggaaagtgttagtctggctaaacgctatgcatatggctcctgagcatcactc |
377 |
Q |
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| T |
3957638 |
gctcaataactttaggttatctcattccaaagggatggaaagtgttagtctggctaaacgctatgcatatggctcctgagcatcactc |
3957551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 361
Target Start/End: Complemental strand, 125870 - 125642
Alignment:
| Q |
134 |
aggtttttgatgaaacattacgcatcaccagtgtctttgcaacttttcgagaggcaacaactgatgcaaacatcaatggttttgttatattccttgtact |
233 |
Q |
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| T |
125870 |
aggttgttgatgaaacaatacgccatatcactatcttttcagcttttcgagaggcagcaattgatgtaaacatcaatggttt-gttattttccttacatc |
125772 |
T |
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| Q |
234 |
ttgtttctag-ctgcttccgattattaaaaatgaataatgaatttaatgtg-tcttttgctcaataactttaggttatctcattccaaagggatggaaag |
331 |
Q |
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| T |
125771 |
ttgttagaatacttcttcgtattattaaaagggaataatgaatttaatatggtcttttgctcaataattttaggttatttcataccaaagggatggaaag |
125672 |
T |
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| Q |
332 |
tgttagtctggctaaacgctatgcatatgg |
361 |
Q |
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| T |
125671 |
tactagtttggctaagcgctcttcatatgg |
125642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 377
Target Start/End: Complemental strand, 144229 - 144119
Alignment:
| Q |
266 |
aataatgaatttaatgtgtcttttgctcaataactttaggttatctcattccaaagggatggaaagtgttagtctggctaaacgctatgcatatggctcc |
365 |
Q |
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| T |
144229 |
aataatgaatt-aatatgtcttttgttcaataatattaggttatttcataccaaaaggatggaaagtattagtttggctaagcgctcttcatatggatcc |
144131 |
T |
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| Q |
366 |
tgagcatcactc |
377 |
Q |
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| T |
144130 |
agagcatcactc |
144119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 145352 - 145284
Alignment:
| Q |
168 |
ctttgcaacttttcgagaggcaacaactgatgcaaacatcaatggttttgttatattccttgtactttgt |
237 |
Q |
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| T |
145352 |
cttttcaacttttcgagaagcaacaactgatgtgaacataaatgg-tttgttatattttttgttctttgt |
145284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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