View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_16 (Length: 356)
Name: NF1275_low_16
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 42074767 - 42074976
Alignment:
| Q |
79 |
ataaagtaaaacatgttttcttggtgtgcagcaagctggacttaatgtgatcacagagttgatcattgggtacctataccccggaaagcctcttgccaat |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42074767 |
ataaagtaaaacatgttttcttggtgtgcagcaagctggacttaatgtgatcacagagttgatcattgggtacctataccctggaaagcctcttgccaat |
42074866 |
T |
|
| Q |
179 |
gtagccttcaagacttatggatacatcagcatggcacaggcacttagtttccttcaagacttcaaattaggtctctacatgaaaattcctccaaaatcta |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42074867 |
gtagccttcaagacttatggatacatcagcatggcacaggcacttagtttccttcaagacttcaaattaggtctctacatgaaaattcctccaaaatcta |
42074966 |
T |
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| Q |
279 |
tgttcatagt |
288 |
Q |
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|||||||||| |
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| T |
42074967 |
tgttcatagt |
42074976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 79 - 289
Target Start/End: Original strand, 42083347 - 42083557
Alignment:
| Q |
79 |
ataaagtaaaacatgttttcttggtgtgcagcaagctggacttaatgtgatcacagagttgatcattgggtacctataccccggaaagcctcttgccaat |
178 |
Q |
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||||| ||| |||||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42083347 |
ataaactaacacatgtttcccttgtgtgcagcaagctggacttaatgtgatcacagagttgatcatcgggtacctataccccggaaagcctcttgccaat |
42083446 |
T |
|
| Q |
179 |
gtagccttcaagacttatggatacatcagcatggcacaggcacttagtttccttcaagacttcaaattaggtctctacatgaaaattcctccaaaatcta |
278 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
42083447 |
gtagccttcaagacttatggatacatgagcatgtcacaggcacttagtttccttcaagacttcaaattaggacactacatgaaaattcctccaaaatcta |
42083546 |
T |
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| Q |
279 |
tgttcatagtg |
289 |
Q |
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||||||||||| |
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| T |
42083547 |
tgttcatagtg |
42083557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 98 - 288
Target Start/End: Original strand, 42059489 - 42059679
Alignment:
| Q |
98 |
cttggtgtgcagcaagctggacttaatgtgatcacagagttgatcattgggtacctataccccggaaagcctcttgccaatgtagccttcaagacttatg |
197 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42059489 |
cttgttgtgcagcaagctggactcaatgtgatcacagagttgatcattgggttcctttaccccggaaagcctcttgctaatgtagccttcaagacttatg |
42059588 |
T |
|
| Q |
198 |
gatacatcagcatggcacaggcacttagtttccttcaagacttcaaattaggtctctacatgaaaattcctccaaaatctatgttcatagt |
288 |
Q |
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| T |
42059589 |
gatacatcagcatggcacaggcacttagtttccttgaagacttcaaattaggacactacatgaaaattcctccaaaagctatgttcatagt |
42059679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 285
Target Start/End: Complemental strand, 36523878 - 36523712
Alignment:
| Q |
119 |
cttaatgtgatcacagagttgatcattgggtacctataccccggaaagcctcttgccaatgtagccttcaagacttatggatacatcagcatggcacagg |
218 |
Q |
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||||||||||||||||||||| | ||||| | | | || || |||||||| ||||| |||||||| ||||| || ||||| |||||||||||| ||| | |
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| T |
36523878 |
cttaatgtgatcacagagttggtaattggtttcatctatcctggaaagccacttgctaatgtagctttcaaaacatatggccacatcagcatggtacaag |
36523779 |
T |
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| Q |
219 |
cacttagtttccttcaagacttcaaattaggtctctacatgaaaattcctccaaaatctatgttcat |
285 |
Q |
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|||| | || ||| |||||||||||||||| | || ||||||||||| |||||||| |||||||| |
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| T |
36523778 |
cactagggtttcttgaagacttcaaattaggccattatatgaaaattccaccaaaatcaatgttcat |
36523712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 36530669 - 36530545
Alignment:
| Q |
161 |
ggaaagcctcttgccaatgtagccttcaagacttatggatacatcagcatggcacaggcacttagtttccttcaagacttcaaattaggtctctacatga |
260 |
Q |
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|||||||| ||||| |||||||| ||||| || ||||| | ||||| |||| ||| |||||| |||| ||| |||||||||||||| | ||| |||| |
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| T |
36530669 |
ggaaagccgcttgctaatgtagctttcaaaacatatggccatatcagtatggtacaagcacttggttttcttggtgacttcaaattaggccactatatga |
36530570 |
T |
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| Q |
261 |
aaattcctccaaaatctatgttcat |
285 |
Q |
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||||| | |||||||| |||||||| |
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| T |
36530569 |
aaattgcaccaaaatcaatgttcat |
36530545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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