View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_19 (Length: 343)
Name: NF1275_low_19
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 57 - 335
Target Start/End: Complemental strand, 35062964 - 35062686
Alignment:
| Q |
57 |
tcatattcatttcctaataaattgataattttggaccattgaacagcctgaaaatttggattggcatgaatttggcaatgatgtatattcaatacctgat |
156 |
Q |
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| T |
35062964 |
tcatattcatttcctaataaattgataattttggaccattgaacagcctgaaaatttggattggcatgaatttggcaatgatgtatattcaatacctgat |
35062865 |
T |
|
| Q |
157 |
caactgcctgttcaatcaagcaccatgattccagatgctcctctcactaacaaagctgacgaagacagtaagattaaggccttggttgatactcctgcac |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35062864 |
caactgcctgttcaatcaagcaccatgattccagatgctcctctcactaacaaagctgacgaagacagtaagattaaggccttggttgatactcctgcac |
35062765 |
T |
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| Q |
257 |
tggattggcagcagtgagtagattatcctccttttcctggtgttttgtttggtgcatagaatgaattacaagtataatc |
335 |
Q |
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| T |
35062764 |
tggattggcaacagtgagtagattatcctccttttcctggtgttttgtttggtgcatagaatgaattacaagtataatc |
35062686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 55 - 335
Target Start/End: Complemental strand, 42813973 - 42813693
Alignment:
| Q |
55 |
attcatattcatttcctaataaattgataattttggaccattgaacagcctgaaaatttggattggcatgaatttggcaatgatgtatattcaatacctg |
154 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
42813973 |
attcatattcatttcctaataaattgataactttggaccattgaacagcctgaaaatttggattgggatgaatttggcaatgatttatattcaatacctg |
42813874 |
T |
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| Q |
155 |
atcaactgcctgttcaatcaagcaccatgattccagatgctcctctcactaacaaagctgacgaagacagtaagattaaggccttggttgatactcctgc |
254 |
Q |
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| T |
42813873 |
atcaactgcccgttcaatcaagcaccatgattccagatgctcctctaactagcaaagctgacgaagacagtaagattaaggccttgattgatactcctgc |
42813774 |
T |
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| Q |
255 |
actggattggcagcagtgagtagattatcctccttttcctggtgttttgtttggtgcatagaatgaattacaagtataatc |
335 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42813773 |
actggattggcaacagtgagtagattatcctcctttacctggtgttttgtttggtgcatagaatgaattacaagtataatc |
42813693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 55 - 335
Target Start/End: Complemental strand, 43024311 - 43024034
Alignment:
| Q |
55 |
attcatattcatttcctaataaattgataattttggaccattgaacagcctgaaaatttggattggcatgaatttggcaatgatgtatattcaatacctg |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43024311 |
attcatattcatttcctaataaattgataattttggaccattaaacagcctgaaaaattggattggcatgaatttggcaatgatgtatattcaatacctg |
43024212 |
T |
|
| Q |
155 |
atcaactgcctgttcaatcaagcaccatgattccagatgctcctctcactaacaaagctgacgaagacagtaagattaaggccttggttgatactcctgc |
254 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| || |||||||||||| ||||||||||||| |
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| T |
43024211 |
atcaactgcctcttcaatcaagcaccatgattccagatg---ctctaactaacaaagctgatgaagacagaaaaattaaggccttgattgatactcctgc |
43024115 |
T |
|
| Q |
255 |
actggattggcagcagtgagtagattatcctccttttcctggtgttttgtttggtgcatagaatgaattacaagtataatc |
335 |
Q |
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| T |
43024114 |
attggattggcaacagtgagtagattatcctccttttcctggtgttttgtctggtgcatagaatgaattacaagtataatc |
43024034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 41563694 - 41563869
Alignment:
| Q |
115 |
gattggcatgaatttggcaatgatgtatattcaatacctgatcaactgcctgttcaatcaagcaccatgattccagatgctcctctcactaacaaagctg |
214 |
Q |
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|||||| ||||||||||||||||| | ||||||||||| |||||||| || |||||||||| || ||||||| ||| ||||||| || | || || || |
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| T |
41563694 |
gattgggatgaatttggcaatgatttgtattcaatacccgatcaacttccagttcaatcaatcaatatgattcaagaggctcctccaacaagcacagttg |
41563793 |
T |
|
| Q |
215 |
acgaagacagtaagattaaggccttggttgatactcctgcactggattggcagcagtgagtagattatcctccttt |
290 |
Q |
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| ||||| |||||||||||||| ||| |||||||||| || |||||||||| ||||||||| ||||| ||||||| |
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| T |
41563794 |
atgaagaaagtaagattaaggcattgattgatactccagcgttggattggcaacagtgagtaaattattctccttt |
41563869 |
T |
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