View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275_low_23 (Length: 317)

Name: NF1275_low_23
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275_low_23
NF1275_low_23
[»] chr3 (7 HSPs)
chr3 (79-169)||(21792451-21792541)
chr3 (174-247)||(1163419-1163492)
chr3 (174-242)||(20124049-20124117)
chr3 (190-242)||(41709277-41709329)
chr3 (144-211)||(33429062-33429128)
chr3 (174-248)||(29504872-29504946)
chr3 (174-247)||(31578671-31578744)
[»] chr8 (3 HSPs)
chr8 (174-249)||(41424440-41424515)
chr8 (185-249)||(32029437-32029500)
chr8 (192-240)||(41424551-41424599)
[»] scaffold0340 (1 HSPs)
scaffold0340 (174-242)||(10976-11044)
[»] scaffold0198 (2 HSPs)
scaffold0198 (174-242)||(11477-11545)
scaffold0198 (174-242)||(11842-11910)
[»] chr5 (4 HSPs)
chr5 (178-249)||(3620842-3620913)
chr5 (174-249)||(39643050-39643125)
chr5 (172-217)||(12640182-12640227)
chr5 (179-239)||(33391425-33391485)
[»] chr4 (6 HSPs)
chr4 (182-249)||(13119361-13119428)
chr4 (174-217)||(39051161-39051204)
chr4 (174-249)||(55264429-55264504)
chr4 (172-242)||(38046269-38046338)
chr4 (172-249)||(44137421-44137498)
chr4 (174-242)||(55397435-55397503)
[»] chr7 (5 HSPs)
chr7 (196-242)||(35660961-35661007)
chr7 (174-242)||(12427936-12428004)
chr7 (174-242)||(21248968-21249036)
chr7 (134-249)||(42709949-42710062)
chr7 (195-249)||(43498267-43498321)
[»] chr6 (5 HSPs)
chr6 (174-248)||(3890005-3890079)
chr6 (204-249)||(3960854-3960899)
chr6 (174-249)||(26330288-26330363)
chr6 (174-217)||(32520096-32520139)
chr6 (170-242)||(2182351-2182423)
[»] chr2 (5 HSPs)
chr2 (174-248)||(17658809-17658883)
chr2 (174-223)||(8033608-8033657)
chr2 (174-242)||(22191421-22191489)
chr2 (197-242)||(6511143-6511188)
chr2 (188-240)||(13921683-13921735)
[»] chr1 (3 HSPs)
chr1 (174-242)||(7790319-7790387)
chr1 (190-242)||(15395417-15395469)
chr1 (134-242)||(40649816-40649923)
[»] scaffold0154 (1 HSPs)
scaffold0154 (191-249)||(6209-6267)
[»] scaffold0252 (1 HSPs)
scaffold0252 (170-242)||(19797-19869)
[»] scaffold0022 (1 HSPs)
scaffold0022 (197-249)||(62721-62773)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 21792451 - 21792541
Alignment:
Q  79 aatataataattaaggattaaatacaatatacataacaaacgagtaaaccattaatttgtcacgagtttctcaattagactcagatctcag 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21792451 aatataataattaaggattaaatacaatatacataacaaacgagtaaaccattaatttgtcacgagtttctcaattagactcagatctcag 21792541  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 1163492 - 1163419
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagag 247  Q
    |||| ||||| |||||||||||||||||| |||||||| |||||||||  ||||| ||||||||||||| ||||    
T  1163492 ttttttcacatgacgagagacttaattgagaaacttttgacaaacacataaactattttaaaatattaatagag 1163419  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 20124117 - 20124049
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||| ||| |||||||||||||||||| |||||||| ||||| | | |||||| ||| |||||||||    
T  20124117 ttttgttacatgacgagagacttaattgagaaacttttgacaaagagatgaactattttgaaatattaa 20124049  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 41709277 - 41709329
Alignment:
Q  190 gagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||||||||||||||||||||| | |  |||| ||||||||||||||    
T  41709277 gagacttaattgaaaaacttttaacaaagatataaacttatttaaaatattaa 41709329  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 33429062 - 33429128
Alignment:
Q  144 gtttctcaattagactcagatctcagtgtgttttgtcacacgacgagagacttaattgaaaaactttt 211  Q
    |||||||||||||| |||  ||||  ||| |||||||||| ||||| |||||||||||||||||||||    
T  33429062 gtttctcaattagattcatttctctttgt-ttttgtcacatgacgaaagacttaattgaaaaactttt 33429128  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 29504872 - 29504946
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagt 248  Q
    |||||||||| |||||| |||  ||| || |||||||||||||| | || ||||| ||||||||||||| |||||    
T  29504872 ttttgtcacatgacgagggaccaaatcgagaaacttttaacaaagataaaaactagtttaaaatattaatagagt 29504946  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 31578671 - 31578744
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagag 247  Q
    ||||||||||| | |||||| |||||||| ||| |||||||||| | ||  |||| ||||||||||||| ||||    
T  31578671 ttttgtcacacaatgagagagttaattgagaaatttttaacaaagataaagactagtttaaaatattaatagag 31578744  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 41424515 - 41424440
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||||||| ||||| |||||||||||||||| |||| ||||| | || ||||||||||||||||||| ||||||    
T  41424515 ttttgtcacaagacgatagacttaattgaaaaatttttgacaaaaataaaaactaatttaaaatattaatagagtc 41424440  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 32029500 - 32029437
Alignment:
Q  185 gacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||| |||||||||||||||||||||||||| | ||| |||| ||| ||||||||||||||||    
T  32029500 gacgagggacttaattgaaaaacttttaacaaagataag-actattttgaaatattaacagagtc 32029437  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 41424599 - 41424551
Alignment:
Q  192 gacttaattgaaaaacttttaacaaacacaagaactaatttaaaatatt 240  Q
    |||||||||||||||||||| ||||| ||| |||||| ||| |||||||    
T  41424599 gacttaattgaaaaacttttgacaaagacatgaactatttttaaatatt 41424551  T

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Target: scaffold0340 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 10976 - 11044
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||| ||||||||||||||||||||||||||||||||| | ||| ||||  |||| ||||| |||||||    
T  10976 ttttttcacacgacgagagacttaattgaaaaacttttgataaagacaaagactattttaagatattaa 11044  T

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Target: scaffold0198 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 11545 - 11477
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||| ||| |||||||||||||| ||| |||| ||||||||||  |||| |||||||||||||    
T  11545 ttttgtcacatgacaagagacttaattgagaaatttttgacaaacacaaagactattttaaaatattaa 11477  T

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Target: scaffold0198; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 11910 - 11842
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||| ||| |||||||||||||| ||| |||| ||||||||||  |||| |||||||||||||    
T  11910 ttttgtcacatgacaagagacttaattgagaaatttttgacaaacacaaagactattttaaaatattaa 11842  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 3620913 - 3620842
Alignment:
Q  178 gtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||| ||| |||||| | ||||||||||| |||||||| |||  ||||| ||||||||||||||||||||    
T  3620913 gtcacatgaccagagacctcattgaaaaactattaacaaagacagaaactagtttaaaatattaacagagtc 3620842  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 39643125 - 39643050
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||||||| ||||| |||||||||||| |||||||| | ||| |||||||  | ||||||||||||| ||||||    
T  39643125 ttttgtcacatgacgaaagacttaattgataaacttttgataaagacaagaagcattttaaaatattaatagagtc 39643050  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 12640182 - 12640227
Alignment:
Q  172 tgttttgtcacacgacgagagacttaattgaaaaacttttaacaaa 217  Q
    |||||| ||||| |||||| |||||||||||||||||||| |||||    
T  12640182 tgttttttcacatgacgagggacttaattgaaaaacttttgacaaa 12640227  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 33391485 - 33391425
Alignment:
Q  179 tcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatat 239  Q
    ||||| ||| || ||| ||||||| |||||||||||||| ||| |||||||||| ||||||    
T  33391485 tcacatgacaagggacataattgagaaacttttaacaaagacatgaactaatttgaaatat 33391425  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 13119361 - 13119428
Alignment:
Q  182 cacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    ||||||||| ||||||||||| |||||||||||||| ||| | |||| ||| ||||||||| ||||||    
T  13119361 cacgacgagggacttaattgagaaacttttaacaaagacagggactattttgaaatattaatagagtc 13119428  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 39051204 - 39051161
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaa 217  Q
    |||||||||| |||||| ||||||||||| ||||||||||||||    
T  39051204 ttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 39051161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 55264504 - 55264429
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||||||| ||  ||||| ||||||||||||||||| ||||| ||||  |||| ||| ||||||||| ||||||    
T  55264504 ttttgtcacatgataagagatttaattgaaaaacttttgacaaagacaatgactattttgaaatattaatagagtc 55264429  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 38046269 - 38046338
Alignment:
Q  172 tgttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||||| || ||||||  ||||| |||||||||||||||| |||| || ||| ||||||||||||    
T  38046269 tgttttgtcacatgaagagagatctaatt-aaaaacttttaacaaagacaaaaattaacttaaaatattaa 38046338  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 44137498 - 44137421
Alignment:
Q  172 tgttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||| |||||||| ||||||||||||||| ||| |||| ||||| |||   |||| ||| ||||||||| ||||||    
T  44137498 tgttttttcacacgatgagagacttaattgataaatttttgacaaagacagatactattttgaaatattaatagagtc 44137421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 55397503 - 55397435
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||| || ||| || | |||| |||||||||||||||| | || ||||| |||||||||||||    
T  55397503 ttttgtcacatgatgagggattaaattaaaaaacttttaacaaagataaaaactattttaaaatattaa 55397435  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 35660961 - 35661007
Alignment:
Q  196 taattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||||    
T  35660961 taattgagaaacttttaacaaagacaagaactaatttgaaatattaa 35661007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 12427936 - 12428004
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||| ||||||||||  ||||||||||||||| ||||| ||| | |||| ||| |||||||||    
T  12427936 ttttgtcacatgacgagagaccaaattgaaaaacttttgacaaagacatggactagtttgaaatattaa 12428004  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 21248968 - 21249036
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||||||||||||||  ||||||||||||||| ||||| |     ||||||||||||||||||    
T  21248968 ttttgtcacacgacgagagaccaaattgaaaaacttttgacaaagatggagactaatttaaaatattaa 21249036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 42710062 - 42709949
Alignment:
Q  134 tttgtcacgagtttctcaattagactcagatctcagtgtgttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaattta 233  Q
    |||||||  |||||||||||||||||||  | ||  | |||||| ||| | |||||| ||||||||||| |||||||| ||||| |||   |||| ||||    
T  42710062 tttgtcaaaagtttctcaattagactcatgtttc--tatgttttttcatatgacgagggacttaattgagaaacttttgacaaagacattgactatttta 42709965  T
Q  234 aaatattaacagagtc 249  Q
    ||||||||| ||||||    
T  42709964 aaatattaatagagtc 42709949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 43498267 - 43498321
Alignment:
Q  195 ttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||||| ||| |||||||||| |||| || |||||||||||||||| ||||||    
T  43498267 ttaattgagaaatttttaacaaagacaataattaatttaaaatattaaaagagtc 43498321  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 3890005 - 3890079
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagt 248  Q
    ||||||||||| ||||| ||| ||||||| |||||||| ||||| ||| |||||| |||| |||||||| |||||    
T  3890005 ttttgtcacacaacgagggacctaattgagaaacttttgacaaagacatgaactagtttagaatattaatagagt 3890079  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 3960854 - 3960899
Alignment:
Q  204 aaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||    
T  3960854 aaacttttgacaaacacaaggactaatttaaaatattaatagagtc 3960899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 26330288 - 26330363
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||| ||||||| || ||||||||||||| |||  ||| ||||| |||| ||||| ||||||||||||| ||||||    
T  26330288 ttttttcacacggcgtgagacttaattgataaatctttgacaaagacaacaactattttaaaatattaatagagtc 26330363  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 32520139 - 32520096
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaa 217  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||    
T  32520139 ttttgtcacatgacgagacacttaattgaaaaacttttgacaaa 32520096  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 2182351 - 2182423
Alignment:
Q  170 tgtgttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||| ||||| |||||  ||||| ||||||||  |||||||||| | | |||||| |||||||||||||    
T  2182351 tgtgttttttcacatgacgaatgacttcattgaaaattttttaacaaaaatatgaactattttaaaatattaa 2182423  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 17658883 - 17658809
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagt 248  Q
    |||||||||| |||||||||||||||||| ||| |||| ||||| ||||  |||| ||| ||||||||| |||||    
T  17658883 ttttgtcacatgacgagagacttaattgagaaatttttgacaaagacaatgactattttgaaatattaatagagt 17658809  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 8033657 - 8033608
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaag 223  Q
    |||||||| | |||||||||||||||||| |||||||||||||| |||||    
T  8033657 ttttgtcatatgacgagagacttaattgagaaacttttaacaaagacaag 8033608  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 22191489 - 22191421
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||| |||||| |||||||| || |||||||| ||||| ||||  |||| |||||||||||||    
T  22191489 ttttgtcacatgacgagggacttaatagagaaacttttgacaaagacaaagactattttaaaatattaa 22191421  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 6511143 - 6511188
Alignment:
Q  197 aattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||| |||||||| |||||||||  |||||||||||||||||||    
T  6511143 aattgagaaacttttgacaaacacagaaactaatttaaaatattaa 6511188  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 13921683 - 13921735
Alignment:
Q  188 gagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatatt 240  Q
    ||||||||||| |||||||||||||| ||| | || ||| |||||||||||||    
T  13921683 gagagacttaactgaaaaacttttaataaagataaaaacaaatttaaaatatt 13921735  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 7790387 - 7790319
Alignment:
Q  174 ttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    |||||||||| || ||| |||| |||| |||||||||| ||||| |||| || ||||||||||||||||    
T  7790387 ttttgtcacatgatgagggactaaattaaaaaacttttgacaaagacaaaaattaatttaaaatattaa 7790319  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 15395417 - 15395469
Alignment:
Q  190 gagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    ||||| |||||||||||||||| ||||| |||  ||||| |||||||||||||    
T  15395417 gagacctaattgaaaaacttttgacaaaaacagtaactattttaaaatattaa 15395469  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 40649923 - 40649816
Alignment:
Q  134 tttgtcacgagtttctcaattagactcagatctcagtgtgttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaattta 233  Q
    |||||||  ||||||| |||||||||||  | ||  ||| |||| ||||| |||||| ||||||||||| |||||||||||||| ||| | || | |||     
T  40649923 tttgtcaaaagtttcttaattagactcatgtttctatgt-ttttttcacatgacgagggacttaattgagaaacttttaacaaagacatgtaccattttg 40649825  T
Q  234 aaatattaa 242  Q
    |||||||||    
T  40649824 aaatattaa 40649816  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 6209 - 6267
Alignment:
Q  191 agacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||||||||| ||||||||||||||  ||| ||||| ||| ||||||||| ||||||    
T  6209 agacttaattgagaaacttttaacaaaggcaaaaactattttgaaatattaatagagtc 6267  T

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Target: scaffold0252 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 19869 - 19797
Alignment:
Q  170 tgtgttttgtcacacgacgagagacttaattgaaaaacttttaacaaacacaagaactaatttaaaatattaa 242  Q
    ||||||||||||||  | ||| |||  |||||| |||||||| ||||||||||  |||| |||||||||||||    
T  19869 tgtgttttgtcacataatgagggaccaaattgagaaacttttgacaaacacaaagactagtttaaaatattaa 19797  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 62773 - 62721
Alignment:
Q  197 aattgaaaaacttttaacaaacacaagaactaatttaaaatattaacagagtc 249  Q
    |||||| |||||||| ||||| | ||||||||||||||||||| || ||||||    
T  62773 aattgagaaacttttgacaaagataagaactaatttaaaatatcaatagagtc 62721  T

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