View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1275_low_25 (Length: 308)
Name: NF1275_low_25
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 5920081 - 5920332
Alignment:
| Q |
30 |
catgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattgtgaacaatagatggatacaaatg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5920081 |
catgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcacacacatctttattattgtgaacaatagatggatacaaatg |
5920180 |
T |
|
| Q |
130 |
agacattttggtcattctttgattagagagatgaccaagccttaagtgccataaggcagtaactggaatacaattgcttgaattacaactgatagaagaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5920181 |
agacattttggtcattctttgattagagagattaccaagtcttaagtgccataaggcagtaactggaatacaattgcttgaatcacaactgatagaagaa |
5920280 |
T |
|
| Q |
230 |
gaaaaattacaagatttattgggggaatgcataaaactagttgaaaaaacat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
5920281 |
gaaaaattacaagatttattgggggaatgcataaaactaattgaacaaacat |
5920332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 270
Target Start/End: Original strand, 20324393 - 20324630
Alignment:
| Q |
30 |
catgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattgtgaacaatagatggatacaaatg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20324393 |
catgagataaacttgaagaaaaaggtaaatgtttttgtttagaaaagtgacaaatatcacacacatctctattattgtgaacaatagatggatacaaatg |
20324492 |
T |
|
| Q |
130 |
agacattttggtcattctttgattagagagatgaccaagccttaagtgccataaggcagtaactggaatacaattgcttgaattacaactgatagaagaa |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
20324493 |
agacattttgatcattctttgattagagagatgaccaagcctaaaatgccataaggcagcaactggaatacaattgttggaattacaactgat---agaa |
20324589 |
T |
|
| Q |
230 |
gaaaaattacaagatttattgggggaatgcataaaactagt |
270 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
20324590 |
gaaaaattacaagatttatttggagaatgcataagactagt |
20324630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 44667908 - 44667949
Alignment:
| Q |
47 |
gaaaaaggtaaatgcttttgtttagaaaagtgacaaatatca |
88 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
44667908 |
gaaaagggtaaatgtttttgtttagcaaagtgacaaatatca |
44667949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University