View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_26 (Length: 286)
Name: NF1275_low_26
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_26 |
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| [»] scaffold0101 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: scaffold0101 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 65 - 286
Target Start/End: Complemental strand, 13392 - 13170
Alignment:
| Q |
65 |
ttgtattcatattctttcctgacttcttgattccgaggtttgatttggttctgacttttattttgatacatgtaaaattgaaa-tatgatgttttgttgc |
163 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| |
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| T |
13392 |
ttgtattcatattctttcctgacttctttattccgaggtttgatttggttctgacttttattttcatacatgttaaattgaaaatatgttgttttgttgc |
13293 |
T |
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| Q |
164 |
aatgttgtgtgttaaaaaacaataacattctgtttggttcctttcttttttgccgatttttattgatgttcaattgagaaggtcacccttagaagttgtt |
263 |
Q |
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| T |
13292 |
aatgttgtgtgttaaaaaacaataacattcagtttggttcctttctttttagccgatttttattaatgttcgattgagaaggtcacccttagaagttgtt |
13193 |
T |
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| Q |
264 |
gctatcaatactacttttttcaa |
286 |
Q |
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| T |
13192 |
gctatcaatactacttttttcaa |
13170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 105 - 286
Target Start/End: Complemental strand, 17322606 - 17322424
Alignment:
| Q |
105 |
tgatttggttctgacttttattttgatacatgtaaaattgaaa-tatgatgttttgttgcaatgttgtgtgttaaaaaacaataacattctgtttggttc |
203 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
17322606 |
tgatttggttctgacttttattttcatacatgttaaattgaaaatatgttgttttgatgcaatgttgtgtgttaaaaaacagtaacattcagtttggttc |
17322507 |
T |
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| Q |
204 |
ctttcttttttgccgatttttattgatgttcaattgagaaggtcacccttagaagttgttgctatcaatactacttttttcaa |
286 |
Q |
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| T |
17322506 |
ctttcttttttgccgatttttattgatgttcaattgagaagatcacccttagaagttgttgctatcaatactacttctttcaa |
17322424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 105 - 286
Target Start/End: Complemental strand, 17328384 - 17328202
Alignment:
| Q |
105 |
tgatttggttctgacttttattttgatacatgtaaaattgaaa-tatgatgttttgttgcaatgttgtgtgttaaaaaacaataacattctgtttggttc |
203 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
17328384 |
tgatttggttctgacttttattttcatacatgttaaattgaaaatatgttgttttgatgcaatgttgtgtgttaaaaaacagtaacattcagtttggttc |
17328285 |
T |
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| Q |
204 |
ctttcttttttgccgatttttattgatgttcaattgagaaggtcacccttagaagttgttgctatcaatactacttttttcaa |
286 |
Q |
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| T |
17328284 |
ctttcttttttgccgatttttattgatgttcaattgagaagatcacccttagaagttgttgctatcaatactacttctttcaa |
17328202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 105 - 282
Target Start/End: Complemental strand, 17305773 - 17305595
Alignment:
| Q |
105 |
tgatttggttctgacttttattttgatacatgtaaaattgaaa-tatgatgttttgttgcaatgttgtgtgttaaaaaacaataacattctgtttggttc |
203 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||| ||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
17305773 |
tgatttggttctgacttttattttcatacatgttaaattgaaaatatgttgttttgatgcaatgttgtgtgttaaatgacagtaacattcaatttggttg |
17305674 |
T |
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| Q |
204 |
ctttcttttttgccgatttttattgatgttcaattgagaaggtcacccttagaagttgttgctatcaatactacttttt |
282 |
Q |
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| T |
17305673 |
ctttcttttttgccgatttttattgatgttcaattgagaaggtcacccttagaagttgttgctatcaatactacttttt |
17305595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7158309 - 7158346
Alignment:
| Q |
6 |
acacagtgcctccacatggacatcaacaaggtggggca |
43 |
Q |
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| T |
7158309 |
acacagtgcctccacatggacatcaacaaggtggggca |
7158346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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