View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_27 (Length: 281)
Name: NF1275_low_27
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 44754172 - 44753932
Alignment:
| Q |
19 |
gcatgtaggtttggtatatactttccattgtgttttgtctaccaaagtttaaagtgcttaggttattattgttcctattattactaaatggttgattttg |
118 |
Q |
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| T |
44754172 |
gcatgtaggtttggtatatactttccattgtgttttgtctaccaaagtttaaagtgcttaggttattattgttcctattattactatatggttgattttg |
44754073 |
T |
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| Q |
119 |
agtagtagcataattgaggaagctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaagaagggtatcttggtagttggttattg |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44754072 |
agtagtagcatagttgaggaagctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaagaagggtatcttggtagttggttattg |
44753973 |
T |
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| Q |
219 |
ttgttgtagcttgaattgaatctaacaaagggtgatgatgt |
259 |
Q |
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| T |
44753972 |
ttgttgtagcttgaattgaatctaacaaagggtgatgatgt |
44753932 |
T |
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