View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_3 (Length: 477)
Name: NF1275_low_3
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 32150977 - 32150609
Alignment:
| Q |
10 |
aataatatatgattcaaagatttagcatgaaagtaatatggcaagtttgatcggtgtcattaggattcaatgtattcatgtgaatttagcaacacccata |
109 |
Q |
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| T |
32150977 |
aataatatatgattcaaagatttagcatgaaagtaatatggcaagtttgatcggtgtcattaggattcaatgtattcatgtgaatttagcaacacccata |
32150878 |
T |
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| Q |
110 |
agaataagaatgatcaaaaccataaatcctataataacagcaaacacggtgacacacatatcaaaattgataatgtcttgttaccaaaacaaatattgtt |
209 |
Q |
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| T |
32150877 |
agaat------gatcaaaaccataaatcctataataacagcaaacacggtgacacacatatcaaaattgataatgtcttgttaccaaaacaaatattgtt |
32150784 |
T |
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| Q |
210 |
accaaaaaattattgactgtcagactaaaaagaaagaggaagaaaaatg----gtaagtgtccgttaactgnnnnnnngagtttgagttttatggaggac |
305 |
Q |
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| T |
32150783 |
accaaaaaattattgactgtcagactaaaaa-aaagaggaagaaaaatggtaagtaagtgtccgttaactgaaaaaaagagtttgagttttatggaggac |
32150685 |
T |
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| Q |
306 |
aggtaaatgcactaaacaccnnnnnnnnttgctaagtaatattactttacaacactcaccatccccatcttgcatc |
381 |
Q |
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| T |
32150684 |
aggtaaatgcactaaacaccaaaaaaaaatgctaagtaatattactttacaacactcaccatccccatcttgcatc |
32150609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 18341144 - 18341181
Alignment:
| Q |
10 |
aataatatatgattcaaagatttagcatgaaagtaata |
47 |
Q |
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| T |
18341144 |
aataatatatgattcaaagattttgcatgaatgtaata |
18341181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 7104816 - 7104678
Alignment:
| Q |
181 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgactgtcagactaaaaagaaagaggaagaaaaatggtaagtgtccgttaactg-nnn |
279 |
Q |
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| T |
7104816 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgaatgtcacacctaaaa-aaagaggatgaa-------aagtgtccgttaactgaaaa |
7104725 |
T |
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| Q |
280 |
nnnngagtttgagttttatgga-ggacaggtaaatgcactaaacacc |
325 |
Q |
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| T |
7104724 |
aagtgagttcgagtattatggagggacaggtaaatgcactaaacacc |
7104678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 325
Target Start/End: Original strand, 8789814 - 8789952
Alignment:
| Q |
181 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgactgtcagactaaaaagaaagaggaagaaaaatggtaagtgtccgttaactg-nnn |
279 |
Q |
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| T |
8789814 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgaatgtcacacctaaaa-aaagaggatgaa-------aagtgtccgttaactgaaaa |
8789905 |
T |
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| Q |
280 |
nnnngagtttgagttttatgga-ggacaggtaaatgcactaaacacc |
325 |
Q |
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| T |
8789906 |
aagtgagttcgagtattatggagggacaggtaaatgcactaaacacc |
8789952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 7110168 - 7110129
Alignment:
| Q |
284 |
gagtttgagttttatggaggacaggtaaatgcactaaaca |
323 |
Q |
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| T |
7110168 |
gagtttgagtcttatggaagacaggtaaatgcactaaaca |
7110129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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