View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275_low_30 (Length: 263)

Name: NF1275_low_30
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275_low_30
NF1275_low_30
[»] chr8 (1 HSPs)
chr8 (22-223)||(43745051-43745250)
[»] chr5 (3 HSPs)
chr5 (22-223)||(28220153-28220354)
chr5 (96-167)||(42555759-42555830)
chr5 (22-72)||(42555709-42555759)
[»] chr7 (29 HSPs)
chr7 (22-182)||(8585471-8585631)
chr7 (38-200)||(3147497-3147659)
chr7 (43-182)||(8628775-8628914)
chr7 (52-200)||(6789737-6789885)
chr7 (43-200)||(8602199-8602356)
chr7 (46-195)||(13333245-13333394)
chr7 (62-202)||(17268162-17268302)
chr7 (46-196)||(8667648-8667798)
chr7 (46-196)||(10494163-10494313)
chr7 (43-196)||(7877519-7877672)
chr7 (43-183)||(8659605-8659745)
chr7 (44-195)||(8636130-8636281)
chr7 (43-197)||(8647105-8647259)
chr7 (62-200)||(17260466-17260604)
chr7 (46-196)||(8671419-8671569)
chr7 (49-182)||(27830667-27830800)
chr7 (58-182)||(8654693-8654817)
chr7 (43-164)||(8590899-8591020)
chr7 (22-183)||(29581606-29581767)
chr7 (50-182)||(8382669-8382801)
chr7 (52-196)||(1301689-1301837)
chr7 (43-200)||(8576551-8576708)
chr7 (64-185)||(8610157-8610278)
chr7 (29-200)||(8570536-8570707)
chr7 (49-128)||(8640339-8640418)
chr7 (43-200)||(8538261-8538418)
chr7 (22-200)||(8581925-8582103)
chr7 (22-182)||(29577434-29577594)
chr7 (108-200)||(8559558-8559650)
[»] chr2 (9 HSPs)
chr2 (43-196)||(16657303-16657456)
chr2 (37-223)||(12234891-12235077)
chr2 (52-182)||(16661787-16661917)
chr2 (51-198)||(7542453-7542600)
chr2 (49-195)||(12245198-12245344)
chr2 (44-198)||(14703635-14703789)
chr2 (49-195)||(11999624-11999770)
chr2 (49-182)||(12258373-12258506)
chr2 (49-124)||(43625713-43625788)
[»] chr1 (3 HSPs)
chr1 (49-195)||(34466585-34466731)
chr1 (44-196)||(4678345-4678497)
chr1 (52-158)||(15595308-15595414)
[»] chr4 (3 HSPs)
chr4 (52-195)||(30775482-30775625)
chr4 (46-196)||(9335680-9335830)
chr4 (44-195)||(35132678-35132829)
[»] chr6 (1 HSPs)
chr6 (22-195)||(28910812-28910985)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 43745250 - 43745051
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgcca 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  43745250 gcagagacatttttgcaattgcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccact--agatgctggtgcca 43745153  T
Q  122 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaactctgtgcgaggacgaaatat 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43745152 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaactctgtgcgaggaagaaatat 43745053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 28220354 - 28220153
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgcca 121  Q
    |||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||  ||||||| ||| |||    
T  28220354 gcagaggcctttttggaatttcctgtcaagaatgcagttattactgtgcctgcttatttcaatgattatcagcggaaagccaccatagatgcaggtacca 28220255  T
Q  122 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaactctgtgcgaggacgaaatat 221  Q
    ||||||| ||  ||||| | | |||| ||||||||||||||||||| ||||||||||||||  |||| || ||||||||||   || ||| |||||||||    
T  28220254 ttgctggtctaaatgttctaaggatagtcaatgaacccactgctgctgctattgcatatggattggacaaaagaactaactgcatgggagaacgaaatat 28220155  T
Q  222 tt 223  Q
    ||    
T  28220154 tt 28220153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 42555759 - 42555830
Alignment:
Q  96 gaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatcaatgaacccactgctgc 167  Q
    |||||||||  ||||||| ||| | |||||||| ||  ||||||||||||||||||||||||||||||||||    
T  42555759 gaaagccacaatagatgcaggtactattgctggtctgaatgttatgaagataatcaatgaacccactgctgc 42555830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 42555709 - 42555759
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccg 72  Q
    |||||| |||||||| || | ||||||||||||||||||||||||||||||    
T  42555709 gcagaggcatttttggaaatgcctgtcaagaatgcagttgttactgtgccg 42555759  T

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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 8585471 - 8585631
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgcca 121  Q
    |||||||||| |||| |||  |||||  | ||||||||||| |||||||| |||||||||||||||| |||||| ||||||||  | |||||||||||||    
T  8585471 gcagagacatatttgaaatcacctgttcaaaatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgcca 8585570  T
Q  122 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatgg 182  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8585571 ttgctggccttaatgttatgaggataatcaatgaacccactgctgcagctattgcatatgg 8585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 3147659 - 3147497
Alignment:
Q  38 aatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgt 137  Q
    |||| ||||||||||||||||||||||| || || |||||||||||||||  |||||||||||| ||  ||||||||||||  |||||||| ||| || |    
T  3147659 aattgcctgtcaagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttattgctggccttaatat 3147560  T
Q  138 tatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
    ||||  ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  3147559 tatgcggataatcaatgaacctactgctgcagctattgcgtatggactggacaagagaactaa 3147497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 8628914 - 8628775
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    ||||| || ||||||||||| || ||||| |||||||||||||||| |||||| ||||||||  |  ||||||||||||||||||| ||| |||||||||    
T  8628914 cctgtaaaaaatgcagttgtcaccgtgcctgcttatttcaatgattctcagcgaaaagccaccatgaatgctggtgccattgctggccttaatgttatga 8628815  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatgg 182  Q
     |||||||||||| ||||||||||||||||||||||||||    
T  8628814 ggataatcaatgaccccactgctgcagctattgcatatgg 8628775  T

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Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 6789885 - 6789737
Alignment:
Q  52 aatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatca 151  Q
    ||||||||| |||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| ||| |||||||    |||||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacggaaagccactttagatgctggtgccattgctggtcttaatgttatacgaataatca 6789786  T
Q  152 atgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
    ||||||| || ||||| ||| |||||||||| || || |||||||||||    
T  6789785 atgaaccaacagctgctgctcttgcatatggccttgataagagaactaa 6789737  T

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Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 8602356 - 8602199
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||   ||||||||||||||||||||| ||  |||| |||     
T  8602356 cctgtcaagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgc 8602257  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
     |||||||||||| || ||||| || ||| |||||||||| ||  |||||||| ||||    
T  8602256 ggataatcaatgagccaactgcagctgctcttgcatatggccttcaaaagagagctaa 8602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 13333245 - 13333394
Alignment:
Q  46 gtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaaga 145  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||||| || |||||  ||||||||||||| |||||||| ||| || | ||    |    
T  13333245 gtcaagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctattgctggccttaatatcattcgaa 13333344  T
Q  146 taatcaatgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
    ||||||||||||| ||||||||||||||||||||||| || || ||||||    
T  13333345 taatcaatgaacctactgctgcagctattgcatatggccttgacaagaga 13333394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 17268302 - 17268162
Alignment:
Q  62 ttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatcaatgaacccac 161  Q
    ||||||| |||||||| ||||| |||| |||||| ||||||||  |||||||||||| ||||||||| ||| ||||  ||||| ||||||||||||| ||    
T  17268302 ttactgtcccggcttacttcaacgattctcagcgaaaagccaccatagatgctggtgtcattgctggccttaatgtattgaaggtaatcaatgaaccaac 17268203  T
Q  162 tgctgcagctattgcatatggtctggaaaagagaactaact 202  Q
    ||||||||||||||||||||| || |  |||||||||||||    
T  17268202 tgctgcagctattgcatatggccttggcaagagaactaact 17268162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 8667798 - 8667648
Alignment:
Q  46 gtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaaga 145  Q
    ||||||||||| |||||||||||||| ||||| |||||||||| |||||| || |||||  ||||||||||| | |||||||| ||| |||| ||   ||    
T  8667798 gtcaagaatgccgttgttactgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggacttaatgtcattcgga 8667699  T
Q  146 taatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
    ||||||||||||| ||||| ||||||||||||||||| || || |||||||    
T  8667698 taatcaatgaacctactgcggcagctattgcatatggccttgacaagagaa 8667648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 10494163 - 10494313
Alignment:
Q  46 gtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaaga 145  Q
    ||||||||||| |||||||||||||||||||| ||||| |||| ||| || || || ||| | ||||||||||| |||||||| ||| |||| ||   ||    
T  10494163 gtcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctattgctggccttaatgtcattcgga 10494262  T
Q  146 taatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
    ||||||||||||| ||||||||||||||||||||||| || || |||||||    
T  10494263 taatcaatgaacctactgctgcagctattgcatatggccttgacaagagaa 10494313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 7877519 - 7877672
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||   ||||||||||||  |||| || ||  ||||||||     
T  7877519 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgcagttgccggcctcaatgttatgc 7877618  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
     |||||| |||||||| |||||||| ||  |||||||||| ||  |||||||||    
T  7877619 ggataattaatgaaccaactgctgctgcccttgcatatggccttcaaaagagaa 7877672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 8659745 - 8659605
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    ||||| |||||||| |||||||| ||||| || || |||||||||| |||||| ||||||||  ||||| | |||||||||||||| ||| |||| ||      
T  8659745 cctgtgaagaatgctgttgttacagtgcctgcatagttcaatgattctcagcgaaaagccaccatagattccggtgccattgctggccttaatgtcattc 8659646  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatggt 183  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  8659645 agataattaatgaacctactgctgcagctattgcatatggt 8659605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 8636130 - 8636281
Alignment:
Q  44 ctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaa 143  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| |||||| ||| ||||   |||||||||||||||||| || ||| |||| ||       
T  8636130 ctgtcaagaatgcagtcattactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgccattgccggccttaatgtaattcg 8636229  T
Q  144 gataatcaatgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
    ||||||||||||||| |||||||||||| |||| ||||| ||  ||||||||    
T  8636230 gataatcaatgaaccaactgctgcagcttttgcgtatggacttcaaaagaga 8636281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 8647259 - 8647105
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||| ||||||| || ||||||||||| ||| || | ||      
T  8647259 cctgtaaagaatgcagttgttactgtgcctgcatacttcaatgattatcagcgaaaagccactatagatgccggggccattgctggccttaatatcatcc 8647160  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaac 197  Q
     ||||||||||||||| || ||||| ||| | |||||||| || || ||||||||    
T  8647159 ggataatcaatgaaccaacagctgctgctctcgcatatggccttgacaagagaac 8647105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 17260604 - 17260466
Alignment:
Q  62 ttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatcaatgaacccac 161  Q
    ||||||| || |||||||||||||||| |||||| ||||||||  ||||||||||||  |||||||| ||| ||||| ||||| |||| |||||||| |     
T  17260604 ttactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttattgctggcctttatgttttgaagttaattaatgaacctat 17260505  T
Q  162 tgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
    ||||||||||||||||||||| || |  |||||||||||    
T  17260504 tgctgcagctattgcatatggccttgtcaagagaactaa 17260466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 8671419 - 8671569
Alignment:
Q  46 gtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaaga 145  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| |||||| |  |||||  | ||||||||| | |||||||| ||| |||| ||   ||    
T  8671419 gtcaagaatgccgttgttaccgtgccagcttacttcaatgattctcagcgaacggccaccattgatgctggtactattgctggacttaatgtcattcgga 8671518  T
Q  146 taatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
    ||||||||||||| ||||||||||||||||||||||| || || |||||||    
T  8671519 taatcaatgaacctactgctgcagctattgcatatggccttgacaagagaa 8671569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 27830667 - 27830800
Alignment:
Q  49 aagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataa 148  Q
    |||||||||||  | || ||||| |||||||||||||| | ||| || ||||||||||||||| | |||||||||||||| ||| ||||||||  |||||    
T  27830667 aagaatgcagtaataaccgtgccagcttatttcaatgactctcaacgaaaagccactgtagattccggtgccattgctggccttaatgttatgcggataa 27830766  T
Q  149 tcaatgaacccactgctgcagctattgcatatgg 182  Q
    | |  || || |||||||||||||||||||||||    
T  27830767 taagcgagcctactgctgcagctattgcatatgg 27830800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 8654817 - 8654693
Alignment:
Q  58 gttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatcaatgaac 157  Q
    ||||||||||||||||| || |||||||| | |||||| ||||| ||  |||||||||||||||||||||| ||| | || ||   |||| |||||||||    
T  8654817 gttgttactgtgccggcatacttcaatgactctcagcgaaaagcaaccatagatgctggtgccattgctggacttaacgtcattcggatactcaatgaac 8654718  T
Q  158 ccactgctgcagctattgcatatgg 182  Q
    | ||||| |||||||||||||||||    
T  8654717 ctactgccgcagctattgcatatgg 8654693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 8591020 - 8590899
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttg-atgttatg 141  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||| ||   ||||||||||| ||||||| |||||| |||| |||    
T  8591020 cctgtcaagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgct-ggcttgaatgtaatg 8590922  T
Q  142 aagataatcaatgaacccactgc 164  Q
      |||||| |||||||| |||||    
T  8590921 cggataattaatgaaccaactgc 8590899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 29581606 - 29581767
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgcca 121  Q
    ||||||| ||||||| |||| ||||| |||||||||||  |||| ||||| |||||||||||||||| |||||| ||||||||   |||||||||    |    
T  29581606 gcagagaaatttttggaattgcctgtaaagaatgcagtgattaccgtgcctgcttatttcaatgattctcagcgaaaagccaccaaagatgctggcatta 29581705  T
Q  122 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggt 183  Q
    | ||||| ||  |||| |||| ||||||||| ||||| |||||||| ||  |||||||||||    
T  29581706 tagctggcctcaatgtaatgaggataatcaacgaaccaactgctgctgcacttgcatatggt 29581767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 8382669 - 8382801
Alignment:
Q  50 agaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataat 149  Q
    |||||| ||||||||| ||||| || ||||||||||||| ||| |||||||||||   |||||||||||| |||||||| ||  |||| |||  ||||||    
T  8382669 agaatgtagttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgcgattgctggcctcaatgtaatgcggataat 8382768  T
Q  150 caatgaacccactgctgcagctattgcatatgg 182  Q
    |||||| || ||||| || ||| ||||||||||    
T  8382769 caatgagccaactgccgctgctcttgcatatgg 8382801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 1301837 - 1301689
Alignment:
Q  52 aatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatca 151  Q
    ||||| |||||||||||||| ||  |||||||||||| |||||| ||||||||  ||||||| ||||| |||||||| ||| |||| ||  ||||||| |    
T  1301837 aatgctgttgttactgtgcctgcacatttcaatgattctcagcgaaaagccaccatagatgccggtgcaattgctggccttaatgtcattcagataatta 1301738  T
Q  152 atgaac----ccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
    ||||||    | ||||||||||||||||| |||||| | || |||||||    
T  1301737 atgaacctagctactgctgcagctattgcgtatggttttgacaagagaa 1301689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 8576708 - 8576551
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    ||||| |||||||||||  || ||||||| |||||||| |||||||  || || | |||||||  |||||| ||||| |||||||| ||  |||| |||     
T  8576708 cctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgc 8576609  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
    |||||||||||||||| ||||| |||||| |||| ||||| ||  |||||||| ||||    
T  8576608 agataatcaatgaaccgactgcggcagctcttgcgtatggccttcaaaagagagctaa 8576551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 8610278 - 8610157
Alignment:
Q  64 actgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatcaatgaacccactg 163  Q
    |||||||| |||||||| ||||||| |||||||||||||||   ||||||||||| |||| |||| ||| |||| ||   ||| ||||||||||| || |    
T  8610278 actgtgcctgcttattttaatgattctcagcggaaagccacaaaagatgctggtgtcatttctggccttaatgtaatccggattatcaatgaaccaacgg 8610179  T
Q  164 ctgcagctattgcatatggtct 185  Q
    |||| ||| |||||||||||||    
T  8610178 ctgcggctcttgcatatggtct 8610157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 8570707 - 8570536
Alignment:
Q  29 catttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgg 128  Q
    |||||||| | | |||||| |||||||||||  ||||||| || |||||||| |||||||  || || | |||||||  |||||| ||||  ||||||||    
T  8570707 catttttggagtctcctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaacgaagagccactaaagatgcaggtgaaattgctgg 8570608  T
Q  129 gcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
     ||  |||| |||  ||||||||||||||| ||||| |||||| |||||||||| ||  |||||||| ||||    
T  8570607 tctcaatgtaatgcggataatcaatgaaccgactgcggcagctcttgcatatggccttcaaaagagagctaa 8570536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 8640339 - 8640418
Alignment:
Q  49 aagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgg 128  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||||  ||||||||  ||||||| || |||||||||||    
T  8640339 aagaatgcagttgttactatgcctgcttacttcaatgattatcagcaaaaagccaccatagatgccggggccattgctgg 8640418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 8538418 - 8538261
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    |||||||| ||||||||  |||| || || ||||||||||||||||  ||||| | ||||||   ||||||||||| ||||||||| ||  |||| |||     
T  8538418 cctgtcaaaaatgcagtgattacagtacctgcttatttcaatgattcacagcgaagagccaccaaagatgctggtgtcattgctggcctcaatgtaatgc 8538319  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
     ||||||||||||||| || ||||| ||| ||||||| || ||  |||||||| ||||    
T  8538318 ggataatcaatgaacctacagctgctgctcttgcatacggccttcaaaagagagctaa 8538261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 8582103 - 8581925
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgcca 121  Q
    |||||| |||||||| | |  ||||| |||||||||||  ||||||| || |||||||| |||||||  || || | |||||||  |||||| ||||  |    
T  8582103 gcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaacgaagagccactaaagatgcaggtgaaa 8582004  T
Q  122 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
    |||| || ||  |||| |||  ||||||||||||||| ||||| |||||| |||||||||| ||  |||||||| ||||    
T  8582003 ttgcaggtctcaatgtaatgcggataatcaatgaaccgactgcggcagctcttgcatatggccttcaaaagagagctaa 8581925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 29577434 - 29577594
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgcca 121  Q
    ||||||| ||||||| | || || || |||||||||||  | || ||||| |||||||||||||||| |||||| ||||||||   |||||| ||    |    
T  29577434 gcagagaaatttttggagttacccgtaaagaatgcagtgatcacagtgccagcttatttcaatgattctcagcgaaaagccaccaaagatgccggcatta 29577533  T
Q  122 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatgg 182  Q
    ||||||| ||  |||| |||  ||||||||||||||| |||||||| ||  ||||||||||    
T  29577534 ttgctggcctcaatgtaatgcggataatcaatgaaccaactgctgctgcacttgcatatgg 29577594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 8559650 - 8559558
Alignment:
Q  108 agatgctggtgccattgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaa 200  Q
    |||||| ||||  |||||||| ||| |||| ||| |||||||||||||||| ||||| || ||| |||||||||| ||  |||||||| ||||    
T  8559650 agatgcaggtgaaattgctggtcttaatgtaatgcagataatcaatgaaccaactgcagctgctcttgcatatggacttcaaaagagatctaa 8559558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 16657303 - 16657456
Alignment:
Q  43 cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatga 142  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||  ||||| ||||||||  |||||||||||||||| ||||| ||| |||| ||      
T  16657303 cctgtcaagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccatcgctggccttaatgtcattc 16657402  T
Q  143 agataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
      || ||||||||||| |||||||||||||||||||||||||| || |||||||    
T  16657403 gaattatcaatgaacctactgctgcagctattgcatatggtcttgacaagagaa 16657456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 12235077 - 12234891
Alignment:
Q  37 caatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatg 136  Q
    |||||||| || ||||||||||||||||| ||||| |||||||||||||||| ||| || ||||| ||| |||||||||||| ||||||||| ||  |||    
T  12235077 caatttccagttaagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtgtcattgctggcctcaatg 12234978  T
Q  137 ttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaactaactctgtgcgaggacgaaatattt 223  Q
    |||||| | |||| || |||||||  || || ||| ||||||||||||| || ||||||||| | | |||  ||| |||||||||||    
T  12234977 ttatgagggtaatgaacgaacccatggcagccgctgttgcatatggtcttgacaagagaactgattgtgttggagaacgaaatattt 12234891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 16661787 - 16661917
Alignment:
Q  52 aatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatca 151  Q
    ||||||||||| ||||| || |||||||| || |||| |||||| ||||||||  | |||||||||||||||||||| ||| | ||| ||| ||||||||    
T  16661787 aatgcagttgtcactgttcctgcttattttaacgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaacgttgtgaggataatca 16661886  T
Q  152 atgaacccactgctgcagctattgcatatgg 182  Q
    ||||||||||||| |||||||||||||||||    
T  16661887 atgaacccactgcagcagctattgcatatgg 16661917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 7542600 - 7542453
Alignment:
Q  51 gaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatc 150  Q
    |||||||||||||||||| || |||||||| ||||||| ||| || ||||||||| ||||||| |||||||||||||| ||  ||||||||| |  |||     
T  7542600 gaatgcagttgttactgtacctgcttattttaatgattctcaacgaaaagccactatagatgcgggtgccattgctggcctcaatgttatgagggcaatg 7542501  T
Q  151 aatgaacccactgctgcagctattgcatatggtctggaaaagagaact 198  Q
    |||||||| ||||| |||||| |||||||||| || || |||||||||    
T  7542500 aatgaacctactgccgcagctgttgcatatggccttgacaagagaact 7542453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 12245198 - 12245344
Alignment:
Q  49 aagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataa 148  Q
    |||||||| ||||||||||| || |||||||| | ||||| |||||| ||||| ||  ||||||||||  | |||||||| ||  ||||||||| | |||    
T  12245198 aagaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctggctcaattgctggtctcaatgttatgagggtaa 12245297  T
Q  149 tcaatgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
    | ||||||||||||||||||||| |||||||||| || |||||||||    
T  12245298 tgaatgaacccactgctgcagctgttgcatatggccttgaaaagaga 12245344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 14703789 - 14703635
Alignment:
Q  44 ctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaa 143  Q
    |||| ||||||||||||||||| ||||| |||||||| | ||||| |||  | ||||||||| | ||||||||||  ||||| || ||  |||||||||     
T  14703789 ctgttaagaatgcagttgttacggtgcctgcttattttagtgattctcaaagaaaagccactatggatgctggtgttattgccggcctcaatgttatgag 14703690  T
Q  144 gataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaact 198  Q
    | |||| |||||||| || |||||||||||||||||||| || || |||||||||    
T  14703689 ggtaatgaatgaacctacagctgcagctattgcatatggccttgacaagagaact 14703635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 11999770 - 11999624
Alignment:
Q  49 aagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataa 148  Q
    |||||||  ||||||||||| || |||||||| | ||||| ||| || ||||||||| ||||||| ||||| ||||||||  |  ||||||| | | |||    
T  11999770 aagaatgttgttgttactgtaccagcttattttagtgattctcaacgaaaagccactatagatgccggtgcaattgctggcatcaatgttataagggtaa 11999671  T
Q  149 tcaatgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
    | |||||||||||||||||| || |||||||||| || || ||||||    
T  11999670 tgaatgaacccactgctgcaactgttgcatatggccttgacaagaga 11999624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 12258373 - 12258506
Alignment:
Q  49 aagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataa 148  Q
    ||||||||||||||||||||||| || ||||| | |||||  ||  ||||||||||| ||||||  |||   |||| ||| ||  ||||||||||||||     
T  12258373 aagaatgcagttgttactgtgcctgcatattttagtgattcacaaaggaaagccactatagatgtgggtaatattgttggcctgaatgttatgaagatat 12258472  T
Q  149 tcaatgaacccactgctgcagctattgcatatgg 182  Q
    | |||||||| |||||||||||| ||||||||||    
T  12258473 taaatgaacctactgctgcagcttttgcatatgg 12258506  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 43625788 - 43625713
Alignment:
Q  49 aagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattg 124  Q
    ||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||||||  |||||| ||||| |||||    
T  43625788 aagaatgcagttgttaccgtgcctgcttacttcaatgattctcagcgaaaagccaccatagatgttggtgtcattg 43625713  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 34466585 - 34466731
Alignment:
Q  49 aagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataa 148  Q
    |||||||||||| | || ||||| |||||||| ||||||| |||||| ||||| ||||| ||||||||| | |||||||| ||| ||||| || | ||||    
T  34466585 aagaatgcagttatcaccgtgcctgcttattttaatgattctcagcgaaaagctactgtggatgctggtactattgctggccttaatgttttgcaaataa 34466684  T
Q  149 tcaatgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
    |||||||||||||||||||||||||||||||||| || || ||||||    
T  34466685 tcaatgaacccactgctgcagctattgcatatggacttgacaagaga 34466731  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 4678345 - 4678497
Alignment:
Q  44 ctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaa 143  Q
    |||| |||||||  |||||||||||||| || || |||||||||| ||| || ||||| ||  |||||||||||||||||||||| ||| |||| ||  |    
T  4678345 ctgtgaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgccattgctggacttaatgtcattca 4678444  T
Q  144 gataatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
     |||||||| ||||| |||| ||||||||||||||||||| | || |||||||    
T  4678445 aataatcaacgaacctactgttgcagctattgcatatggttttgacaagagaa 4678497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 15595414 - 15595308
Alignment:
Q  52 aatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatca 151  Q
    |||||||||||||| ||||| |||||| ||||||||| ||| || ||||||||| ||||||| |||||||||||||| ||| |||||||   | ||||||    
T  15595414 aatgcagttgttaccgtgcctgcttatctcaatgattctcaacgaaaagccactatagatgcaggtgccattgctggccttaatgttatacgggtaatca 15595315  T
Q  152 atgaacc 158  Q
    |||||||    
T  15595314 atgaacc 15595308  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 30775625 - 30775482
Alignment:
Q  52 aatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaagataatca 151  Q
    ||||||||| | |||||||| |||||||||||||||   ||||| ||||||||| | |||||||||||||||||||| ||| |||||||||  ||||| |    
T  30775625 aatgcagttatcactgtgcctgcttatttcaatgatgcacagcgaaaagccactatggatgctggtgccattgctggtcttaatgttatgagaataatta 30775526  T
Q  152 atgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
    |||| |||||||| ||||||||||||||||| || || ||||||    
T  30775525 atgagcccactgcagcagctattgcatatggacttgagaagaga 30775482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 9335680 - 9335830
Alignment:
Q  46 gtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaaga 145  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| |||||| || |||||  ||||||||||| | |||||||| ||| |||| ||   ||    
T  9335680 gtcaagaatgccgttgttaccgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggccttaatgtcattcgga 9335779  T
Q  146 taatcaatgaacccactgctgcagctattgcatatggtctggaaaagagaa 196  Q
    ||||||||||||| ||||||||||||||||||||||| || || |||||||    
T  9335780 taatcaatgaacctactgctgcagctattgcatatggccttgataagagaa 9335830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 35132829 - 35132678
Alignment:
Q  44 ctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgccattgctgggcttgatgttatgaa 143  Q
    |||| ||||||||||||||||||||||| |||||||| | ||||| ||| || ||||||||| ||||||||||||| |||||||| |   |||||||||     
T  35132829 ctgttaagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctattgctggtcccaatgttatgag 35132730  T
Q  144 gataatcaatgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
      |||| |||||||| ||||| |||||  |||||||||| || || ||||||    
T  35132729 agtaatgaatgaacctactgccgcagcggttgcatatggccttgacaagaga 35132678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 28910985 - 28910812
Alignment:
Q  22 gcagagacatttttgcaatttcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccactgtagatgctggtgcca 121  Q
    |||| |||||||||| |||| || |||||||||||| |||||||| || | | |||||||||||||| | || ||||||||||  |||||||||||||||    
T  28910985 gcagtgacatttttggaattgcccgtcaagaatgcaattgttactttgactggttatttcaatgattcttagaggaaagccaccatagatgctggtgcca 28910886  T
Q  122 ttgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcatatggtctggaaaagaga 195  Q
    |||   ||||| ||||||||  |||||||||||| | |||||||| ||||||| ||||||| || || ||||||    
T  28910885 ttgtcaggcttaatgttatgcggataatcaatgagctcactgctgtagctatttcatatggcctcgacaagaga 28910812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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