View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_32 (Length: 255)
Name: NF1275_low_32
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 20086275 - 20086435
Alignment:
| Q |
1 |
tccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||| |
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| T |
20086275 |
tccggcgtgcactgagctagacagtaaagggtctgagattcagaaatccttgcttcttttgtggcaaacttcttgttgttgtcagtagtaagtggacctg |
20086374 |
T |
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| Q |
101 |
ctgcttcctctgcagttttatccatcgtcgaaagcaataaaggcatgaagctttttgtgtt |
161 |
Q |
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| T |
20086375 |
ctgcttcctctgcagttttatccatcgtcgaaaacaataaaggcatgaagctttctgtgtt |
20086435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 22204888 - 22204731
Alignment:
| Q |
1 |
tccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
22204888 |
tccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttg---ttgtcagcagtaagtggacctg |
22204792 |
T |
|
| Q |
101 |
ctgcttcctctgcagttttatccatcgtcgaaagcaataaaggcatgaagctttttgtgtt |
161 |
Q |
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| T |
22204791 |
ctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttctgtgtt |
22204731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 20238191 - 20238358
Alignment:
| Q |
4 |
ggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctg |
103 |
Q |
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| T |
20238191 |
ggcgtgcactgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctg |
20238290 |
T |
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| Q |
104 |
cttcctctgcagttttatccatcgtcgaaagcaataaaggcatgaagctttttgtgttagatacgttg |
171 |
Q |
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||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
20238291 |
ctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgttagatacgttg |
20238358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 22132175 - 22132342
Alignment:
| Q |
4 |
ggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctg |
103 |
Q |
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||||||||||||||||| |||||||| || |||||||||||||||| | |||| | |||||||| ||| ||| |||||| ||||||||||| | |||| |
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| T |
22132175 |
ggcgtgcactgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctg |
22132274 |
T |
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| Q |
104 |
cttcctctgcagttttatccatcgtcgaaagcaataaaggcatgaagctttttgtgttagatacgttg |
171 |
Q |
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| T |
22132275 |
ctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgttagatacgttg |
22132342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 24385043 - 24384916
Alignment:
| Q |
59 |
ttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttatccatcgtcgaaagcaataaaggcatgaagctttttgt |
158 |
Q |
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|||||| ||| |||||||||||| ||||||||||||| || ||||||||||||||||| ||| ||| ||||||| ||||||| ||||||||||||||| |
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| T |
24385043 |
ttgtggaaaacttcttgttgttgcaagcagtaagtggacctactgcttcctctgcagttatattcattgtcgaaaataataaagccatgaagctttttgt |
24384944 |
T |
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| Q |
159 |
gttagatacgttgcctacgttcaacatg |
186 |
Q |
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|||||||| ||||||| ||||| ||||| |
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| T |
24384943 |
gttagatatgttgcctgcgttccacatg |
24384916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 20205595 - 20205711
Alignment:
| Q |
1 |
tccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctt-tgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagct |
99 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||| | |||||| ||||||||| || ||||| |||| ||| |||||| || |||||||| | |
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| T |
20205595 |
tccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtggactt |
20205693 |
T |
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| Q |
100 |
gctgcttcctctgcagtt |
117 |
Q |
| |
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|||||||| ||| ||||| |
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| T |
20205694 |
gctgcttcatctacagtt |
20205711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22099618 - 22099734
Alignment:
| Q |
1 |
tccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctt-tgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagct |
99 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||| | |||||| ||||||||| || ||||| |||| ||| |||||| || |||||||| | |
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| T |
22099618 |
tccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtggactt |
22099716 |
T |
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| Q |
100 |
gctgcttcctctgcagtt |
117 |
Q |
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|||||||| ||| ||||| |
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| T |
22099717 |
gctgcttcatctacagtt |
22099734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 21972163 - 21972316
Alignment:
| Q |
5 |
gcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgc |
104 |
Q |
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|||||||||||||||| | ||||||||||||| ||| |||| |||||||||||| ||||| |||||| |||||| || |||| ||| |||||| |
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| T |
21972163 |
gcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaa---cttgttcttgtcaccactaagcggacttgctgc |
21972259 |
T |
|
| Q |
105 |
ttcctctgcagttttatccatcgtcgaaagcaataaaggcatgaagctttttgtgtt |
161 |
Q |
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||| ||||||||| || ||| || |||| |||||||| || ||||||||| ||||| |
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| T |
21972260 |
ttcgtctgcagttcgattcatggttgaaaacaataaagacacgaagcttttcgtgtt |
21972316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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