View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_33 (Length: 253)
Name: NF1275_low_33
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 37389064 - 37389218
Alignment:
| Q |
83 |
ccaactcttggcgcccaagactttggccctgttaggataaataaacaacttatttgcaacttatc-------gcacttatgtataagctatttatatata |
175 |
Q |
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| T |
37389064 |
ccaactcttggcacccaagactttggccctgttaggataaataaacaacttatttgcaacttatcatgataagcacttatgtataagctatttatatata |
37389163 |
T |
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| Q |
176 |
acaaaagattaaataaaggaaaatagttctcctataagctatcttcgagtactta |
230 |
Q |
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| T |
37389164 |
acaaaagattaaataaaggaaaatagttcgcctataagctatcttggagtactta |
37389218 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37388982 - 37389011
Alignment:
| Q |
1 |
taatcgttcttgattacggattatggttga |
30 |
Q |
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| T |
37388982 |
taatcgttcttgattacggattatggttga |
37389011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 22759125 - 22759187
Alignment:
| Q |
152 |
ttatgtataagctatttatatataacaaaagattaaataaaggaaaatagttctcctataagcta |
216 |
Q |
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| T |
22759125 |
ttatgtttaagctatttgtata--acaaaagataaaataaaggaaaattgttttcatataagcta |
22759187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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