View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_35 (Length: 251)
Name: NF1275_low_35
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11113689 - 11113924
Alignment:
| Q |
1 |
atgagcattttacgaaattatggtgcgaggaagaaaatggtttagtcgggaggtctgctagttggtgacttgttgcatgagagaaacattgagttgcttg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
11113689 |
atgagcattttacgaaattatggttcgaggaagaaaatggtttagtcgggaggtctgccaattggtgacttgttgcatgagagaaacattgagttgcttg |
11113788 |
T |
|
| Q |
101 |
gcttctagcaggtcaggtaccaaatgataatttacgatcaagagttttatgtaggaatgaaatgaaggattattacatcaataagttgtctgagtaggtt |
200 |
Q |
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||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11113789 |
gctgctagcaggtcacgtgccaaatgataatttacgatcaagagtttcatgtaggaatgaaatgaagggttattacatcaataagttgtctgagtaggtt |
11113888 |
T |
|
| Q |
201 |
ttaggtgtatcaatcaattgaacactgatttctagc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11113889 |
ttaggtgtatcaatcaattgaacactgatttctagc |
11113924 |
T |
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