View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_38 (Length: 243)
Name: NF1275_low_38
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 47876406 - 47876621
Alignment:
| Q |
1 |
gtcctatatcaatctaattacatcatagactcgattaaa-gtatatatctcattcagagttatatacatagatataacaaatatttacgtagaggaaata |
99 |
Q |
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| T |
47876406 |
gtcctatatcaatctaattacatcagagacttgattaaaagtgtatatctcattcagagttatatacatagaaataacaaatatttatgtagaggaaata |
47876505 |
T |
|
| Q |
100 |
agggagagaaataacaaatattctacaccattatctcaattctcaacaattcccattacttttccaagaatattgacctcaaatctaggttccctcaaac |
199 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47876506 |
agggagagaaataacaaatattcttcaccatta-------tctcaacaattcccattacttttccaagaatattgacctcaaatctaggttccctcaaac |
47876598 |
T |
|
| Q |
200 |
tagagttaaggaagagtactttc |
222 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47876599 |
tagagttaaggaagagtactttc |
47876621 |
T |
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