View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_4 (Length: 470)
Name: NF1275_low_4
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 30834327 - 30834758
Alignment:
| Q |
20 |
catcatcatatcattacataaatatgtaacttttttacgttaacacatatttttacgctccatggtgattttctaagagttacactttgtaacttgtgta |
119 |
Q |
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| T |
30834327 |
catcatcatatcattatataaatatgtaatttttttacgttaacacatatttttacgctccatggtgattttctaagagttacactttgtaacttccgta |
30834426 |
T |
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| Q |
120 |
aaattatgatggatcgtcgtgattctgacacatctattgtaatatcaaacatacacttttaacgtgatactagtaaacactagttgaatat--------- |
210 |
Q |
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| T |
30834427 |
aaattatgatggatcgtcgtgattctgacacatctattgtaataccaaacatacacttttaacgtgatactagtaaacactagttgaatatttgggcacc |
30834526 |
T |
|
| Q |
211 |
--ttagcaaatggcctgatacttggagtgtaaacacagcgtgcattcaaatctgacatgtgaagcttataaattataactgctctagttggcaacattac |
308 |
Q |
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| T |
30834527 |
aattggtaaatggcctgatccttggagtgtaaacacagcgtgcattcaaatctgacatgtgaagcttataaattataactgctctagttggcaacattac |
30834626 |
T |
|
| Q |
309 |
atgagattctcttgcannnnnnnnnnattcaaatcaaatgctttagaaaagggaacttcagcatctacttgatttacaacaagacaccaaatccttccaa |
408 |
Q |
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| T |
30834627 |
atgagattctcttgca-tttttttttattcaaatcaaatgctttagaaaagggaacttcatcatctacttgatttacaacaagacaccaaatccttccaa |
30834725 |
T |
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| Q |
409 |
gatatactattcaaattgaaaaaacatatattt |
441 |
Q |
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| T |
30834726 |
gatatactattcaaattgaaaaaacatatattt |
30834758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 36729467 - 36729412
Alignment:
| Q |
107 |
tgtaacttgtgtaaaattatgatggatcgtcgtgattctgacacatctattgtaat |
162 |
Q |
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| T |
36729467 |
tgtaatttttgtaaaattatgatgcatcgtcgtgattcttacacacccattgtaat |
36729412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 35015844 - 35015754
Alignment:
| Q |
84 |
gtgattttctaagagttacactttgtaacttgtgtaaaattatgatggatcgtcgtgattctgacacatctattgtaatatcaaacataca |
174 |
Q |
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| T |
35015844 |
gtgattgtctaaaagctacactttgtagtttctgcaaaattatgataggtcattgtgattctgacacatccaccgtaatatcgaacataca |
35015754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 42722308 - 42722385
Alignment:
| Q |
100 |
tacactttgtaacttgtgtaaaattatgatggatcgtcgtgattctgacacatctattgtaatatcaaacatacactt |
177 |
Q |
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|||||||| |||||| || ||||||| | ||| || |||||||||||| | ||| ||||||||||||||||||||| |
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| T |
42722308 |
tacactttataacttctgcaaaattaaggtgggtcatcgtgattctgataagcctactgtaatatcaaacatacactt |
42722385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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