View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_40 (Length: 221)
Name: NF1275_low_40
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6314317 - 6314221
Alignment:
| Q |
1 |
atttaacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacattcat |
97 |
Q |
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| T |
6314317 |
atttaacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcataacttcatcagcaacattcat |
6314221 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 6329500 - 6329429
Alignment:
| Q |
26 |
tccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacattcat |
97 |
Q |
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| T |
6329500 |
tccatccacaagcccattgattctatcacctatcatgcaaccaacactcataaattcttcagcaacattcat |
6329429 |
T |
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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 56537993 - 56537905
Alignment:
| Q |
5 |
aacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacat |
93 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
56537993 |
aacttaccaagacccagaaactccgtccacaagccctttgattctatcacctgtgatgcaaccaactccaataacttcttcagcaacat |
56537905 |
T |
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